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[177418_at]

Description F59B8.1 /REP_DB=WormBase Gene ID /WP=CE11454 /TR=P90899 /GB=CAA92779.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 12      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_total > 14      4grp_total > 13      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 133
(0.3)
P 		99.6
(-1.4)
P 		68.9
(-3)
P 		187
(3)
P 		118
B 144.6
(-0.3)
P 		81.5
(-2.1)
P 		51.6
(-3)
P 		260.5
(3)
P 		209
C 166.4
(-1)
P 		102.2
(-3)
P 		108.7
(-2.8)
P 		294.3
(3)
P 		192
avr 148
(-0.5) 		94.4
(-2.4) 		76.4
(-3) 		247.3
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 152.1
(0.6)
P 		191.4
(3)
P 		181.3
(2.4)
P 		112.3
(-1.9)
P 		153.1
(0.6)
P 		94.8
(-3)
P 		97
B 179.7
(3)
P 		161.9
(1.3)
P 		132.7
(-1.6)
P 		133
(-1.6)
P 		118.4
(-3)
P 		124.5
(-2.4)
P 		61
C 195.5
(3)
P 		116
(-2.1)
P 		117.5
(-2)
A 		176.8
(1.8)
P 		101.8
(-3)
P 		111.9
(-2.4)
P 		94
avr 175.8
(3) 		156.4
(1.2) 		143.8
(0.1) 		140.7
(-0.2) 		124.4
(-1.7) 		110.4
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 48.4
(3)
P 		21.6
(-2.3)
P 		18
(-3)
P 		27.4
(-1.1)
P 		30
B 46.1
(1.7)
P 		20.1
(-1.9)
P 		12
(-3)
P 		55.5
(3)
P 		44
C 55.1
(3)
P 		29.4
(-3)
P 		37.9
(-1)
P 		49.6
(1.7)
P 		26
avr 49.9
(3) 		23.7
(-2.8) 		22.6
(-3) 		44.2
(1.7) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 28
(-2.3)
P 		68.1
(3)
P 		39.5
(-0.8)
P 		28.5
(-2.3)
P 		46.2
(0.1)
P 		23.1
(-3)
P 		45
B 62.5
(3)
P 		53.9
(1.3)
P 		32.2
(-3)
P 		35.2
(-2.4)
P 		48.1
(0.1)
P 		46.4
(-0.2)
P 		30
C 72.5
(3)
P 		35.4
(-2.2)
P 		29.9
(-3)
A 		35.6
(-2.2)
P 		33
(-2.6)
P 		37.5
(-1.9)
P 		43
avr 54.3
(3) 		52.5
(2.5) 		33.9
(-2.8) 		33.1
(-3) 		42.4
(-0.4) 		35.7
(-2.3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177418_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9799
Sequence Type Exemplar sequence
Representative Public ID F59B8.1 NCBI
Target Description F59B8.1 /REP_DB=WormBase Gene ID /WP=CE11454 /TR=P90899 /GB=CAA92779.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028077(11), NM_001028078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028077 NCBI Caenorhabditis elegans F59B8.1a (F59B8.1) mRNA, complete cds. 11/11 None
NM_001028078 NCBI Caenorhabditis elegans F59B8.1b (F59B8.1) mRNA, complete cds. 11/11 None
SNAP00000009902 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9436693:9439033:1 11/11 None
GENEFINDER00000009905 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9435014:9439033:1 11/11 None
F59B8.1a ENSEMBL cdna:known chromosome:CEL140:IV:9436687:9439054:1 gene:F59B8.1 11/11 A 
F59B8.1b ENSEMBL cdna:known chromosome:CEL140:IV:9436861:9439033:1 gene:F59B8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9436897-9439039(+) 100.0 100.0
Public Domain and Genome References
Ensembl F59B8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89741 Hypothetical protein F59B8.1a [Caenorhabditis elegans] ref|NP_001023248.1| F59B8.1a [Caenorhabditis elegans] 1.0E-128
blast CAA92779 Hypothetical protein F59B8.1b [Caenorhabditis elegans] ref|NP_001023249.1| F59B8.1b [Caenorhabditis elegans] 1.0E-118
blast CAA92779 Hypothetical protein F59B8.1b [Caenorhabditis elegans] ref|NP_001023249.1| F59B8.1b [Caenorhabditis elegans] 1.0E-115
blast CAD89741 Hypothetical protein F59B8.1a [Caenorhabditis elegans] ref|NP_001023248.1| F59B8.1a [Caenorhabditis elegans] 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:177418_AT
gatacacttatcactactgcatatagattgcatcgaacgaggtggagaatattggaacct
tacagacgactaaagaatgcattgaaaaagttgcaagaagattatctgaaatcaaaggaa
gcaaatgcattgatgagatatgtgaagttaggacaatctgttagagaagttgctatgctg
gaaaaacaatactggaaattattaaatataccggctcaggagggaaccgaagatgcaaac
tgctatgttgtgaaaatcatagaacttcttgaagacaccccgactcaattaccaccaaca
cgtggaatcggagctctattacagtcaacaatagggaaaccagctgaggcaaatgtagac
acagtgcttcatgattctttaaaagctcgaaaatcggaagatcttgtaaaagagtgcgaa
ggtttgtatgcccaactgtatcgtctcacaaagaaatatcttggattgagacgtcttatc
aaggagcttcacgacaaatatgaagctacaagaatgttcccaattgttccacgttacgct
atgctcaaaaagatgatcaaggcgacactgagggctccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACACTTATCACTACTGCATATA 665 423 40 Antisense
ATATTGGAACCTTACAGACGACTAA 102 1 88 Antisense
ATATACCGGCTCAGGAGGGAACCGA 634 19 245 Antisense
AGGGAACCGAAGATGCAAACTGCTA 259 57 260 Antisense
AGAACTTCTTGAAGACACCCCGACT 378 73 300 Antisense
CGACTCAATTACCACCAACACGTGG 477 251 320 Antisense
CAACACGTGGAATCGGAGCTCTATT 671 187 335 Antisense
ATCGGAGCTCTATTACAGTCAACAA 68 35 346 Antisense
AACCAGCTGAGGCAAATGTAGACAC 44 149 377 Antisense
GACACAGTGCTTCATGATTCTTTAA 259 367 397 Antisense
TCAAGGCGACACTGAGGGCTCCAGA 230 631 596 Antisense
Sequence Source Affymetrix Proprietary Database