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[177416_at]

Description R07B5.3 /REP_DB=WormBase Gene ID /WP=CE06257 /TR=Q21784 /GB=CAA96663.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 30      4grp_high_8_8 > 04      6grp_total > 42      4grp_total > 29      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 83.5
(3)
P 		73.1
(2)
A 		21.9
(-3)
A 		74.2
(2.1)
A 		62
B 62.3
(3)
P 		54.9
(1)
P 		40.4
(-3)
A 		43.3
(-2.2)
A 		22
C 97.5
(0.7)
P 		66.2
(-2.3)
P 		58.5
(-3)
P 		121.1
(3)
P 		63
avr 81.1
(3) 		64.7
(0.6) 		40.3
(-3) 		79.5
(2.8) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 83.6
(-1.2)
P 		82.8
(-1.3)
P 		101.8
(3)
P 		82.5
(-1.4)
P 		75.5
(-3)
P 		81.9
(-1.5)
P 		26
B 100.1
(1.6)
P 		82.8
(0)
P 		114.3
(3)
P 		70.3
(-1.2)
P 		66.5
(-1.5)
P 		51.2
(-3)
P 		63
C 75.8
(0.2)
P 		72.3
(-0.5)
P 		91.8
(3)
P 		86.3
(2)
P 		57.9
(-3)
A 		58.1
(-3)
P 		34
avr 86.5
(0.5) 		79.3
(-0.6) 		102.6
(3) 		79.7
(-0.5) 		66.6
(-2.6) 		63.7
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 30.4
(3)
P 		15.9
(-0.5)
A 		5.7
(-3)
A 		10.9
(-1.7)
A 		25
B 19.9
(3)
P 		13.6
(-0.5)
P 		9.4
(-2.9)
A 		9.2
(-3)
A 		11
C 32.3
(3)
P 		19
(-3)
P 		20.4
(-2.4)
P 		20.4
(-2.4)
P 		13
avr 27.5
(3) 		16.2
(-1.3) 		11.8
(-3) 		13.5
(-2.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 15.4
(-3)
P 		29.5
(3)
P 		22.2
(-0.1)
P 		20.9
(-0.7)
P 		22.8
(0.1)
P 		19.9
(-1.1)
P 		14
B 34.8
(3)
P 		27.6
(0.3)
P 		27.8
(0.4)
P 		18.6
(-3)
P 		27
(0.1)
P 		19.1
(-2.8)
P 		16
C 28.1
(3)
P 		22.1
(-0.4)
P 		23.4
(0.4)
P 		17.4
(-3)
P 		18.7
(-2.3)
A 		19.5
(-1.8)
P 		11
avr 26.1
(2.8) 		26.4
(3) 		24.5
(1.5) 		19
(-3) 		22.8
(0.1) 		19.5
(-2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12198
Sequence Type Exemplar sequence
Representative Public ID R07B5.3 NCBI
Target Description R07B5.3 /REP_DB=WormBase Gene ID /WP=CE06257 /TR=Q21784 /GB=CAA96663.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073136(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073136 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-40) (sru-40) mRNA, complete cds. 10/11 None
GENEFINDER00000041733 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9835332:9838627:-1 10/11 None
R07B5.3 ENSEMBL cdna:known chromosome:CEL140:V:9835332:9836582:-1 gene:R07B5.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9835368-9836582(-) 96.88 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-40
Ensembl R07B5.3
Entrez Gene 187650 Entrez gene
SwissProt Q21784 EMBL-EBI
WormBase CE34582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96663 Hypothetical protein R07B5.3 [Caenorhabditis elegans] ref|NP_505537.2| Serpentine Receptor, class U family member (sru-40) [Caenorhabditis elegans] 0.0
blast CAE72258 Hypothetical protein CBG19377 [Caenorhabditis briggsae] 0.0
blast CAA96664 Hypothetical protein R07B5.4 [Caenorhabditis elegans] ref|NP_505538.1| Serpentine Receptor, class U family member (sru-38) [Caenorhabditis elegans] 1.0E-179
blast CAA94829 Hypothetical protein C50C10.1 [Caenorhabditis elegans] emb|CAA96614.1| Hypothetical protein C50C10.1 [Caenorhabditis elegans] ref|NP_505531.1| Serpentine Receptor, class U family member (sru-37) [Caenorhabditis elegans] 1.0E-121
blast CAE72258 Hypothetical protein CBG19377 [Caenorhabditis briggsae] 5.0E-66
blast CAB04004 Hypothetical protein C55A1.8 [Caenorhabditis elegans] ref|NP_506894.2| Serpentine Receptor, class U family member (sru-42) [Caenorhabditis elegans] 1.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505537.2 7 20-42,76-98,108-130,150-172,205-227,247-269,282-304
R07B5.3 7 20-42,76-98,108-130,150-172,205-227,247-269,282-304
GENEFINDER00000041733 11 20-42,67-89,109-131,152-174,204-226,249-271,281-303,350-372,407-429,449-471,484-506
Sequence
Target Sequence 
>C. ELEGANS:177416_AT
gttccacaagaactctcattctgttcaatgagaaaaataagatataccagttatgtatat
tatttcttgtcttctggggtcctgccacatatgtgctcagttccgtttcagcatttccaa
atataacatcgaaagttgtttgcatgcagttagactttccatatcagaaaggtgccatta
ctataaccactgataatgtgtatggaaatactcacttgtctatcggaaatgcaacttttt
ctagtttaatgatgttatcaattgttttcacaacttgtctgatgattgtaaagctacgta
agcggaaattactgaattcttctgattgtcgatatcataaaacgaaaggagaagtcactt
tgaccgtgactatttttctaatcctggtaccatctctcttaactcaaattataacggtaa
attttcaattgtctcgacggattacagcagattcattgatttcagatgtcgagtcttatg
aatccggaatatcattcctatatcttgattatgcggccattttttatagatttccgggtc
ggcattgtatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCACAAGAACTCTCATTCTGTT 293 441 404 Antisense
GTCCTGCCACATATGTGCTCAGTTC 142 477 482 Antisense
GTTCCGTTTCAGCATTTCCAAATAT 426 441 503 Antisense
GCATGCAGTTAGACTTTCCATATCA 571 309 545 Antisense
AGGTGCCATTACTATAACCACTGAT 653 55 573 Antisense
GGAAATACTCACTTGTCTATCGGAA 252 527 607 Antisense
GACCGTGACTATTTTTCTAATCCTG 333 383 765 Antisense
GTACCATCTCTCTTAACTCAAATTA 87 459 790 Antisense
GTCTCGACGGATTACAGCAGATTCA 652 469 834 Antisense
ATGTCGAGTCTTATGAATCCGGAAT 419 47 869 Antisense
GATTTCCGGGTCGGCATTGTATCCT 89 429 932 Antisense
Sequence Source Affymetrix Proprietary Database