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[177410_at]

Description C01A2.2 /REP_DB=WormBase Gene ID /WP=CE07784 /TR=Q9XVT7 /GB=CAB02696.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 53      6grp_total > 61      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 385.3
(-2.7)
P 		738.1
(3)
P 		726.7
(2.8)
P 		364.7
(-3)
P 		373
B 429
(-3)
P 		680.9
(1.8)
P 		741.4
(3)
P 		477.7
(-2.1)
P 		312
C 384.5
(-3)
P 		611.1
(1.2)
P 		706.7
(3)
P 		428
(-2.2)
P 		322
avr 399.6
(-3) 		676.7
(2.1) 		724.9
(3) 		423.5
(-2.6) 		325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 985
1 2 3 4 5 6 range
A 744.9
(-0.5)
P 		665.4
(-0.9)
P 		1159.9
(2.1)
P 		1311.6
(3)
P 		692.3
(-0.8)
P 		327.1
(-3)
P 		985
B 632.7
(-1.3)
P 		720.4
(-0.5)
P 		1076.7
(2.9)
P 		1090.7
(3)
P 		837.3
(0.6)
P 		457.9
(-3)
P 		633
C 512.9
(-2.8)
P 		681
(-1.4)
P 		1096.8
(2.1)
P 		1202.7
(3)
P 		716.1
(-1.1)
P 		490.1
(-3)
P 		713
avr 630.2
(-1.4) 		688.9
(-1) 		1111.1
(2.3) 		1201.7
(3) 		748.6
(-0.5) 		425
(-3) 		777
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 140.3
(0.8)
P 		160.2
(1.7)
P 		190
(3)
P 		53.4
(-3)
P 		137
B 136.8
(0)
P 		168.2
(2.7)
P 		171.8
(3)
P 		101.8
(-3)
P 		70
C 127.3
(-1.1)
P 		175.7
(0.6)
P 		246.3
(3)
P 		72.2
(-3)
P 		174
avr 134.8
(-0.2) 		168
(1.4) 		202.7
(3) 		75.8
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 137.3
(-1.6)
P 		236.6
(0.7)
P 		252.6
(1.1)
P 		332.7
(3)
P 		208.9
(0.1)
P 		79.6
(-3)
P 		253
B 220.2
(-1.2)
P 		239.8
(-0.6)
P 		261.5
(0.2)
P 		288.9
(1.2)
P 		340.2
(3)
P 		170.7
(-3)
P 		170
C 190.1
(-1.6)
P 		207.8
(-0.7)
P 		279.1
(3)
P 		241.9
(1.1)
P 		231.7
(0.5)
P 		164
(-3)
P 		115
avr 182.5
(-1.2) 		228.1
(0.6) 		264.4
(2.1) 		287.8
(3) 		260.3
(1.9) 		138.1
(-3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2163
Sequence Type Exemplar sequence
Representative Public ID C01A2.2 NCBI
Target Description C01A2.2 /REP_DB=WormBase Gene ID /WP=CE07784 /TR=Q9XVT7 /GB=CAB02696.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060957 NCBI Caenorhabditis elegans C01A2.2 (C01A2.2) mRNA, complete cds. 11/11 None
SNAP00000025718 ENSEMBL cdna:SNAP chromosome:CEL140:I:13405389:13406599:1 11/11 None
GENEFINDER00000025738 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13405389:13406599:1 11/11 None
C01A2.2 ENSEMBL cdna:known chromosome:CEL140:I:13405389:13406599:1 gene:C01A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13405319-13406530(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01A2.2
Entrez Gene 173208 Entrez gene
SwissProt Q9XVT7 EMBL-EBI
WormBase CE07784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02696 Hypothetical protein C01A2.2 [Caenorhabditis elegans] ref|NP_493358.1| C01A2.2 [Caenorhabditis elegans] 1.0E-126
blast CAE63865 Hypothetical protein CBG08428 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493358.1 4 62-84,99-121,133-155,170-192
C01A2.2 4 62-84,99-121,133-155,170-192
SNAP00000025718 4 62-84,99-121,133-155,170-192
GENEFINDER00000025738 4 62-84,99-121,133-155,170-192
Sequence
Target Sequence 
>C. ELEGANS:177410_AT
agtacaacattttctacgcgggattgtgtatgagcaggaagtggattattcgaggtttga
gacaaaactggatggatcagaagtgataaccttccgtgagaatgacaaagccttccgatt
atttgggacaaacgttcatgtgaaggtcggatcctacatcgcgtgtgccatcggattcgc
cgtcaccatcgcattctgcgtctcttactctctattccactctcgtggacagggacggaa
tccgtttattgatcatttggagatcattgatttgatcttcgccttccttgtgggtctacc
atgccatattttgctattttacgggcttcagaagagcaaaaaggtcttctttagcccgtt
ccttgtgttttacatgacaaacttcattttgaactgcattttcacaattttgacgcttgg
agcatttgccatggatgttcatcgacgagttttcgggaatattcgatttgatttgggatg
gactgcttttcagatctgcttcactgccgcccaggggcttgcgatctacgttgtgatgcg
tgggcgtaaatacgtggctgccaagagcttctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACAACATTTTCTACGCGGGATT 428 61 51 Antisense
TGTGAAGGTCGGATCCTACATCGCG 172 557 189 Antisense
CTCTCTATTCCACTCTCGTGGACAG 375 231 258 Antisense
ATCATTGATTTGATCTTCGCCTTCC 624 29 313 Antisense
GTGGGTCTACCATGCCATATTTTGC 130 489 340 Antisense
TTTTGCTATTTTACGGGCTTCAGAA 708 677 359 Antisense
CCCGTTCCTTGTGTTTTACATGACA 352 259 405 Antisense
GGAGCATTTGCCATGGATGTTCATC 232 521 469 Antisense
GGATGGACTGCTTTTCAGATCTGCT 176 515 526 Antisense
GGCTTGCGATCTACGTTGTGATGCG 13 537 566 Antisense
ATACGTGGCTGCCAAGAGCTTCTGG 15 25 600 Antisense
Sequence Source Affymetrix Proprietary Database