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[177409_at]

Description C06C6.7 /REP_DB=WormBase Gene ID /WP=CE15601 /TR=O62033 /GB=CAB07557.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 12.2
(-2.8)
A 		13.1
(-2.7)
A 		9.5
(-3)
A 		76.5
(3)
A 		67
B 9
(-1.8)
A 		31.6
(3)
A 		3.3
(-3)
A 		10.3
(-1.5)
A 		28
C 6.2
(-3)
A 		16.5
(-2.1)
A 		9.1
(-2.8)
A 		75.8
(3)
A 		70
avr 9.1
(-2.8) 		20.4
(-1.3) 		7.3
(-3) 		54.2
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 14.4
(3)
A 		14
(2.8)
A 		3.1
(-3)
A 		7
(-0.9)
A 		14
(2.8)
A 		10.7
(1)
A 		11
B 7.6
(-3)
A 		46.1
(3)
A 		8.2
(-2.9)
A 		14.4
(-1.9)
A 		31.4
(0.7)
A 		36.5
(1.5)
A 		39
C 25.1
(1.6)
A 		8.3
(-2.5)
A 		28
(2.3)
A 		6.3
(-3)
A 		30.9
(3)
A 		23
(1.1)
A 		25
avr 15.7
(-0.6) 		22.8
(2) 		13.1
(-1.6) 		9.2
(-3) 		25.4
(3) 		23.4
(2.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.4
(-1.7)
A 		2.8
(-2.8)
A 		2.5
(-3)
A 		11.2
(3)
A 		9
B 2.9
(-1.2)
A 		7.8
(3)
A 		0.8
(-3)
A 		2.2
(-1.8)
A 		7
C 2
(-3)
A 		4.7
(-1.5)
A 		3.2
(-2.3)
A 		12.8
(3)
A 		11
avr 3.1
(-2.2) 		5.1
(-0.3) 		2.2
(-3) 		8.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.7
(-0.2)
A 		5
(3)
A 		0.7
(-3)
A 		1.8
(-1.5)
A 		4.2
(1.9)
A 		2.6
(-0.3)
A 		4
B 2.7
(-2.7)
A 		15.3
(3)
A 		2
(-3)
A 		3.8
(-2.2)
A 		12.8
(1.9)
A 		13.6
(2.2)
A 		13
C 9.3
(2.5)
A 		2.5
(-2.2)
A 		7.1
(1)
A 		1.3
(-3)
A 		10
(3)
A 		7.7
(1.4)
A 		9
avr 4.9
(-0.7) 		7.6
(1.7) 		3.3
(-2.1) 		2.3
(-3) 		9
(3) 		8
(2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13071
Sequence Type Exemplar sequence
Representative Public ID C06C6.7 NCBI
Target Description C06C6.7 /REP_DB=WormBase Gene ID /WP=CE15601 /TR=O62033 /GB=CAB07557.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074611 NCBI Caenorhabditis elegans C06C6.7 (C06C6.7) mRNA, complete cds. 11/11 None
SNAP00000040508 ENSEMBL cdna:SNAP chromosome:CEL140:V:15994813:15998190:1 11/11 None
GENEFINDER00000040518 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15991337:15998154:1 11/11 None
C06C6.7 ENSEMBL cdna:known chromosome:CEL140:V:15994789:15998190:1 gene:C06C6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15994788-15998190(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06C6.7
Entrez Gene 182310 Entrez gene
SwissProt O62033 EMBL-EBI
WormBase CE15601 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07557 Hypothetical protein C06C6.7 [Caenorhabditis elegans] ref|NP_507012.1| C06C6.7 [Caenorhabditis elegans] 0.0
blast CAB07556 Hypothetical protein C06C6.6 [Caenorhabditis elegans] ref|NP_507011.1| C06C6.6 [Caenorhabditis elegans] 0.0
blast AAC26299 Hypothetical protein Y57G7A.6 [Caenorhabditis elegans] ref|NP_493938.1| Y57G7A.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.0E-22
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.0E-22
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 6.3E-22
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.0E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507012.1 1 801-823
C06C6.7 1 801-823
SNAP00000040508 1 768-790
GENEFINDER00000040518 2 5-24,1441-1463
Sequence
Target Sequence 
>C. ELEGANS:177409_AT
tcgagcttctctcatggaactttccaagttggaccttgatttttctcgctacaaatctgc
gttcaatagtatgaaggaggtattgaggtctgttgaagctggcttcaagggcgaaaagct
tgaattatctatatctgtcagtagaagtggaaatgtcacaacaactacagaatttgcaat
tgttgctacctcctcctatagtggtcttgtgtacacggttgggacattggttattgccgt
catcttggtaactatcactttcttgtggtgttggtatgaccagagttgcatctatcataa
actcaagagacgctacatcaccaacatgaagactgctccagaattgggctcgattactcc
cgattcgtcacaagatagtcaatcagaacgagaagcagagaggtttgttgcgcgaaaacc
acatacttcacaactgcctccaccacctacaccgtcaccggctacgctcactccaacctc
agcaaatactactacagccgcttctgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGCTTCTCTCATGGAACTTTCC 342 603 2205 Antisense
ATTGAGGTCTGTTGAAGCTGGCTTC 238 5 2286 Antisense
AATTTGCAATTGTTGCTACCTCCTC 282 175 2375 Antisense
TACCTCCTCCTATAGTGGTCTTGTG 126 649 2391 Antisense
GGGACATTGGTTATTGCCGTCATCT 327 495 2425 Antisense
GCCGTCATCTTGGTAACTATCACTT 28 285 2440 Antisense
CTCAAGAGACGCTACATCACCAACA 347 227 2506 Antisense
GACTGCTCCAGAATTGGGCTCGATT 334 375 2535 Antisense
GATTACTCCCGATTCGTCACAAGAT 553 429 2556 Antisense
AAAACCACATACTTCACAACTGCCT 623 131 2619 Antisense
AATACTACTACAGCCGCTTCTGTCA 7 173 2689 Antisense
Sequence Source Affymetrix Proprietary Database