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[177408_at]

Description C06C3.5 /REP_DB=WormBase Gene ID /WP=CE00886 /TR=Q17712 /GB=CAA85312.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 5.3
(-3)
A 		34.3
(0.3)
A 		58.5
(3)
A 		38.3
(0.7)
A 		53
B 35.6
(3)
A 		33.5
(2.1)
A 		22.2
(-3)
A 		28.7
(-0.1)
A 		13
C 42.8
(-3)
A 		46.6
(-2)
A 		66.2
(3)
A 		52.3
(-0.6)
A 		23
avr 27.9
(-3) 		38.1
(-0.1) 		49
(3) 		39.8
(0.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 28.9
(-0.2)
A 		19.6
(-1.8)
A 		29.7
(-0.1)
A 		12.7
(-3)
A 		28.2
(-0.4)
A 		47.9
(3)
A 		35
B 40.3
(3)
A 		34.6
(1.4)
A 		40.2
(3)
A 		19.4
(-3)
A 		29.2
(-0.2)
A 		35.6
(1.7)
A 		21
C 17.5
(-3)
A 		53.7
(3)
A 		37.5
(0.3)
A 		25.3
(-1.7)
A 		43.1
(1.2)
P 		42.2
(1.1)
A 		36
avr 28.9
(-0.4) 		36
(1.4) 		35.8
(1.4) 		19.1
(-3) 		33.5
(0.8) 		41.9
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.9
(-3)
A 		7.4
(-0.5)
A 		15.3
(3)
A 		5.6
(-1.3)
A 		13
B 11.4
(3)
A 		8.3
(0)
A 		5.1
(-3)
A 		6.1
(-2)
A 		6
C 14.2
(-0.7)
A 		13.4
(-1.1)
A 		23.1
(3)
A 		8.8
(-3)
A 		14
avr 9.2
(-1.1) 		9.7
(-0.7) 		14.5
(3) 		6.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.3
(-1.5)
A 		7
(-0.3)
A 		6.5
(-0.7)
A 		3.2
(-3)
A 		8.5
(0.7)
A 		11.7
(3)
A 		9
B 14
(3)
A 		11.5
(1.3)
A 		9.8
(0.1)
A 		5.2
(-3)
A 		11.9
(1.6)
A 		13.3
(2.5)
A 		9
C 6.5
(-2.3)
A 		16.4
(3)
A 		9.5
(-0.7)
A 		5.1
(-3)
A 		14
(1.7)
P 		14.1
(1.8)
A 		11
avr 8.6
(-0.1) 		11.6
(2) 		8.6
(-0.1) 		4.5
(-3) 		11.5
(1.9) 		13
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177408_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3279
Sequence Type Exemplar sequence
Representative Public ID C06C3.5 NCBI
Target Description C06C3.5 /REP_DB=WormBase Gene ID /WP=CE00886 /TR=Q17712 /GB=CAA85312.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000008810 ENSEMBL cdna:SNAP chromosome:CEL140:II:9380002:9380421:-1 11/11 None
GENEFINDER00000008822 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9380002:9380421:-1 11/11 None
C06C3.5 ENSEMBL cdna:pseudogene chromosome:CEL140:II:9379961:9381247:-1 gene:C06C3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008808 1/11 Cross Hyb Matching Probes None
GENEFINDER00000008820 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9379998-9380418(-) 100.0 100.0
Public Domain and Genome References
Ensembl C06C3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T19000 hypothetical protein C06C3.5 - Caenorhabditis elegans 3.0E-57
blast CAA85315 Hypothetical protein C06C3.8 [Caenorhabditis elegans] ref|NP_496001.2| C06C3.8 [Caenorhabditis elegans] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:177408_AT
aaggttgggcttcgaatgagagcaatagtccaagtggctaagaagcaagaaggcatcgag
tcagctgagtgttccgagatgaataaggacgacgagaacattatcgataaagatgatcaa
cgctcttcgcgtgcatcctctacggatgaacatcccggagcgaagccgacactgattcac
catacaacgccgtcactcgattgccagccaacaaaacataaatctattcaatcagacttc
tcggaaaaatgcatcaactcgtgtatcaagcaacaaggatcgctcacgagcatccggaac
gtgcggagactttgtacaagacgcttttcgacactgtttcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTTGGGCTTCGAATGAGAGCAA 409 159 16 Antisense
AGAAGGCATCGAGTCAGCTGAGTGT 114 75 63 Antisense
GTCAGCTGAGTGTTCCGAGATGAAT 586 463 75 Antisense
AAGATGATCAACGCTCTTCGCGTGC 440 155 125 Antisense
TTCGCGTGCATCCTCTACGGATGAA 187 697 141 Antisense
CGGATGAACATCCCGGAGCGAAGCC 579 243 158 Antisense
AAATCTATTCAATCAGACTTCTCGG 261 117 235 Antisense
AAATGCATCAACTCGTGTATCAAGC 270 119 262 Antisense
CAAGGATCGCTCACGAGCATCCGGA 641 183 289 Antisense
GGAGACTTTGTACAAGACGCTTTTC 371 493 320 Antisense
AAGACGCTTTTCGACACTGTTTCGG 685 151 333 Antisense
Sequence Source Affymetrix Proprietary Database