[Home] | [Total List]

[177407_s_at]

Description C54G4.9 /REP_DB=WormBase Gene ID /WP=CE05515 /TR=Q18854 /GB=CAA99821.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 93      6grp_total > 96      4grp_total > 33      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 286
(-3)
P 		392.5
(1.4)
P 		394.2
(1.5)
P 		431.2
(3)
P 		145
B 357.1
(-3)
P 		472.4
(2.5)
P 		482.2
(3)
P 		364.6
(-2.6)
P 		125
C 284.5
(-3)
P 		462.3
(2.4)
P 		479.3
(2.9)
P 		482.9
(3)
P 		198
avr 309.2
(-3) 		442.4
(2.6) 		451.9
(3) 		426.2
(1.9) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 533
1 2 3 4 5 6 range
A 264.8
(-3)
P 		269.5
(-2.9)
P 		405
(-0.7)
P 		532.4
(1.3)
P 		636.7
(3)
P 		631
(2.9)
P 		372
B 264.4
(-3)
P 		348.8
(-2)
P 		358.2
(-1.9)
P 		480.7
(-0.6)
P 		650.4
(1.3)
P 		797.2
(3)
P 		533
C 272.1
(-3)
P 		414.6
(-0.9)
P 		356.5
(-1.8)
P 		439.7
(-0.5)
P 		546.9
(1.1)
P 		678.2
(3)
P 		406
avr 267.1
(-3) 		344.3
(-1.9) 		373.2
(-1.5) 		484.3
(-0) 		611.3
(1.7) 		702.1
(3) 		435
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 104.1
(3)
P 		85.2
(0.2)
P 		103.1
(2.9)
P 		63.1
(-3)
P 		41
B 113.9
(2.6)
P 		116.7
(3)
P 		111.7
(2.2)
P 		77.7
(-3)
P 		39
C 94.2
(-2.1)
P 		132.9
(0.6)
P 		167
(3)
P 		81.4
(-3)
P 		86
avr 104.1
(0.4) 		111.6
(1.2) 		127.3
(3) 		74.1
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 48.8
(-3)
P 		95.9
(-1)
P 		88.2
(-1.4)
P 		135
(0.6)
P 		192.1
(3)
P 		153.6
(1.4)
P 		143
B 92
(-2.9)
P 		116.1
(-2.2)
P 		87
(-3)
P 		127.3
(-1.9)
P 		264.3
(2.1)
P 		297.3
(3)
P 		210
C 100.9
(-2.5)
P 		126.5
(-1.4)
P 		90.7
(-2.9)
P 		88.4
(-3)
P 		177
(0.8)
P 		227
(3)
P 		139
avr 80.6
(-3) 		112.8
(-1.7) 		88.6
(-2.7) 		116.9
(-1.5) 		211.1
(2.4) 		226
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177407_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.654
Sequence Type Exemplar sequence
Representative Public ID C54G4.9 NCBI
Target Description C54G4.9 /REP_DB=WormBase Gene ID /WP=CE05515 /TR=Q18854 /GB=CAA99821.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059807 NCBI Caenorhabditis elegans C54G4.9 (C54G4.9) mRNA, complete cds. 11/11 None
GENEFINDER00000028911 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8032778:8034645:-1 9/11 None
SNAP00000028903 ENSEMBL cdna:SNAP chromosome:CEL140:I:8033105:8034645:-1 11/11 None
C54G4.9 ENSEMBL cdna:known chromosome:CEL140:I:8033041:8034651:-1 gene:C54G4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8033035-8034576(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54G4.9
Entrez Gene 172583 Entrez gene
SwissProt Q18854 EMBL-EBI
WormBase CE05515 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99821 Hypothetical protein C54G4.9 [Caenorhabditis elegans] ref|NP_492208.1| C54G4.9 [Caenorhabditis elegans] 0.0
blast CAE63698 Hypothetical protein CBG08213 [Caenorhabditis briggsae] 1.0E-134
blast CAE63698 Hypothetical protein CBG08213 [Caenorhabditis briggsae] 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:177407_S_AT
ttttggcttgctgctcttcgaatattcaatggatatggaattgggatgaacgacataaca
gaatcagccaagcttttagagaaaacagcttctagatattctctcaaaagcagacctctg
tttctgaagcattttcttaaaaaaatttccgaaaagaaagatacaaatattggtttggaa
ccgcaagttgttgcaaccatcatcacaacttaccagcgaaatgcattcggcctcaggtca
cctgaattttatgaagaacttggtgaattttgggcactgtgtttgaagattaaatacgat
gacgtttattttgcaactgtctacttctctgctgtgttcgcactagctcaggcacaagca
gttttcaaaattaaaaaagagctctgtcgtgaagtttaccataagattcttcaaccgatg
cacgagcagcttgtcgactttgtcaagctgaaacaagttgaatccaataaagctacgagt
gaggaagaagtaatgcgcctggagcaccaaaatatcggcgcaagctacttttccattttg
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGGCTTGCTGCTCTTCGAATAT 457 677 811 Antisense
AGCAGACCTCTGTTTCTGAAGCATT 431 77 919 Antisense
CCATCATCACAACTTACCAGCGAAA 381 271 1007 Antisense
CCAGCGAAATGCATTCGGCCTCAGG 144 273 1023 Antisense
TATTTTGCAACTGTCTACTTCTCTG 545 661 1117 Antisense
TGTTCGCACTAGCTCAGGCACAAGC 221 563 1145 Antisense
AGAGCTCTGTCGTGAAGTTTACCAT 650 69 1188 Antisense
GATTCTTCAACCGATGCACGAGCAG 223 431 1215 Antisense
GCACGAGCAGCTTGTCGACTTTGTC 237 315 1230 Antisense
GAAGTAATGCGCCTGGAGCACCAAA 116 337 1297 Antisense
GCGCAAGCTACTTTTCCATTTTGAC 119 289 1328 Antisense
Sequence Source Affymetrix Proprietary Database