[Home] | [Total List]

[177405_at]

Description F35E2.2 /REP_DB=WormBase Gene ID /WP=CE17772 /TR=O62225 /GB=CAB04283.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 12.3
(-1.7)
A 		33
(3)
A 		6.8
(-3)
A 		6.9
(-3)
A 		26
B 3.1
(-3)
A 		14.6
(3)
A 		6.2
(-1.4)
A 		14.3
(2.8)
A 		12
C 20.2
(-0.1)
A 		37.5
(3)
A 		3.7
(-3)
A 		26.8
(1.1)
A 		34
avr 11.9
(-1.3) 		28.4
(3) 		5.6
(-3) 		16
(-0.3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 8.2
(-2)
A 		8
(-2)
A 		22.2
(0.2)
A 		1.5
(-3)
A 		15.1
(-0.9)
A 		40.1
(3)
A 		39
B 28.4
(2.4)
A 		31.4
(3)
A 		2.3
(-3)
A 		16.5
(-0.1)
A 		4.1
(-2.6)
A 		14.1
(-0.6)
A 		29
C 15.9
(0.1)
A 		26.1
(3)
A 		7
(-2.4)
A 		4.9
(-3)
A 		16.2
(0.2)
A 		15.1
(-0.1)
A 		21
avr 17.5
(0.8) 		21.8
(2.5) 		10.5
(-1.9) 		7.6
(-3) 		11.8
(-1.4) 		23.1
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.5
(0.4)
A 		7.2
(3)
A 		1.8
(-2.2)
A 		1
(-3)
A 		6
B 1
(-3)
A 		3.6
(3)
A 		1.4
(-2.1)
A 		3
(1.6)
A 		3
C 6.7
(0.4)
A 		10.8
(3)
A 		1.3
(-3)
A 		4.5
(-1)
A 		10
avr 4.1
(-0.3) 		7.2
(3) 		1.5
(-3) 		2.8
(-1.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.5
(-2.3)
A 		2.8
(-1.5)
A 		4.8
(-0.2)
A 		0.4
(-3)
A 		4.6
(-0.3)
A 		9.8
(3)
A 		9
B 9.9
(2.7)
A 		10.4
(3)
A 		0.6
(-3)
A 		4.4
(-0.7)
A 		1.7
(-2.3)
A 		5.3
(-0.1)
A 		10
C 5.9
(1.2)
A 		8
(3)
A 		1.8
(-2.3)
A 		1
(-3)
A 		5.2
(0.6)
A 		5
(0.4)
A 		7
avr 5.8
(1.5) 		7.1
(3) 		2.4
(-2.4) 		1.9
(-3) 		3.8
(-0.8) 		6.7
(2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.629
Sequence Type Exemplar sequence
Representative Public ID F35E2.2 NCBI
Target Description F35E2.2 /REP_DB=WormBase Gene ID /WP=CE17772 /TR=O62225 /GB=CAB04283.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060589 NCBI Caenorhabditis elegans F35E2.2 (F35E2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000041142 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11744209:11745821:-1 11/11 None
SNAP00000041137 ENSEMBL cdna:SNAP chromosome:CEL140:I:11744759:11745821:-1 11/11 None
F35E2.2 ENSEMBL cdna:known chromosome:CEL140:I:11744759:11745821:-1 gene:F35E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11744689-11745752(-) 97.55 100.0
Public Domain and Genome References
Gene Title
Ensembl F35E2.2
Entrez Gene 185285 Entrez gene
SwissProt O62225 EMBL-EBI
WormBase CE17772 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04283 Hypothetical protein F35E2.2 [Caenorhabditis elegans] ref|NP_492990.1| F35E2.2 [Caenorhabditis elegans] 1.0E-152
blast CAB04283 Hypothetical protein F35E2.2 [Caenorhabditis elegans] ref|NP_492990.1| F35E2.2 [Caenorhabditis elegans] 1.0E-149
blast CAB04286 Hypothetical protein F35E2.8 [Caenorhabditis elegans] ref|NP_492986.1| F35E2.8 [Caenorhabditis elegans] 6.0E-10
blast CAB04286 Hypothetical protein F35E2.8 [Caenorhabditis elegans] ref|NP_492986.1| F35E2.8 [Caenorhabditis elegans] 1.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.2E-5
Sequence
Target Sequence 
>C. ELEGANS:177405_AT
agttcaagttcaattcccacatgccactgatgcgctgacaaattttaagcagaagctttt
ccggatctgcaaaacttttcaaattaagactgcttctgtttacttcagctgcccagttga
agctcacatcatcgagttgctggggttcattaaaaagcggaaggttcaattccaagattt
cagtatcaagggctcggtgacggagcaaaatttcaaatttttcatgacaattggagcaca
gagatttcatttggatatgagtgaaactcaaccagtgaccgaggttttcgcattgttgaa
aattcaagaagttgtgctgcaaaatgctgcgataagctcgcagatgctgaacaaagttct
gaaggcgtggaaaacgacgagccgactgaaaaagttccgagtgatcaagaattggaaaat
ggacacttctgtggtgtttcaaggcttgcatgttaagcaaaaaagccgctctgacacaaa
aaaggaatacgaaattgatctcgatggtggcggtaaagctacatgctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCAAGTTCAATTCCCACATGCC 666 63 243 Antisense
ACATGCCACTGATGCGCTGACAAAT 298 105 261 Antisense
GAAGCTTTTCCGGATCTGCAAAACT 20 343 294 Antisense
AGACTGCTTCTGTTTACTTCAGCTG 614 71 329 Antisense
AGCTGCCCAGTTGAAGCTCACATCA 133 81 349 Antisense
CACATCATCGAGTTGCTGGGGTTCA 701 193 367 Antisense
TCAGTATCAAGGGCTCGGTGACGGA 76 623 422 Antisense
GAGTGAAACTCAACCAGTGACCGAG 331 401 501 Antisense
GTGACCGAGGTTTTCGCATTGTTGA 391 481 517 Antisense
TTCTGTGGTGTTTCAAGGCTTGCAT 588 693 669 Antisense
GGTGGCGGTAAAGCTACATGCTGCT 288 499 748 Antisense
Sequence Source Affymetrix Proprietary Database