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[177404_at]

Description F37H8.2 /REP_DB=WormBase Gene ID /WP=CE23705 /TR=O17864 /GB=CAB04348.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 37      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 7.2
(-2.2)
A 		28
(3)
A 		10
(-1.5)
A 		3.8
(-3)
A 		24
B 10
(-1.7)
A 		11.7
(-1.2)
A 		5.5
(-3)
A 		25.8
(3)
A 		20
C 33.7
(3)
A 		7.8
(-2.9)
A 		7.4
(-3)
A 		9.4
(-2.5)
A 		26
avr 17
(3) 		15.8
(2.2) 		7.6
(-3) 		13
(0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 2.4
(-3)
A 		17.4
(1.3)
A 		2.5
(-3)
A 		20.5
(2.1)
A 		19.7
(1.9)
A 		23.5
(3)
A 		21
B 34.3
(3)
A 		5.6
(-2.7)
A 		4.3
(-3)
A 		13.2
(-1.2)
A 		4.2
(-3)
A 		4.3
(-3)
A 		30
C 5.9
(-1.7)
A 		6
(-1.7)
A 		4.3
(-3)
A 		5.2
(-2.3)
A 		4.7
(-2.7)
A 		11.9
(3)
A 		8
avr 14.2
(3) 		9.7
(0.4) 		3.7
(-3) 		13
(2.3) 		9.5
(0.3) 		13.2
(2.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.6
(-0.8)
A 		6.1
(3)
A 		2.6
(-0.8)
A 		0.6
(-3)
A 		6
B 3.2
(-0.3)
A 		2.9
(-0.7)
A 		1.3
(-3)
A 		5.5
(3)
A 		4
C 11.2
(3)
A 		2.2
(-2.6)
A 		2.6
(-2.4)
A 		1.6
(-3)
A 		10
avr 5.7
(3) 		3.7
(-0.4) 		2.2
(-3) 		2.6
(-2.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.4
(-3)
A 		6.2
(3)
A 		0.5
(-2.9)
A 		5.2
(2)
A 		5.9
(2.7)
A 		5.7
(2.5)
A 		6
B 11.9
(3)
A 		1.8
(-2.6)
A 		1
(-3)
A 		3.5
(-1.6)
A 		1.7
(-2.6)
A 		1.6
(-2.7)
A 		11
C 2.2
(-0.7)
A 		1.8
(-1.6)
A 		1.1
(-3)
A 		1.1
(-3)
A 		1.5
(-2.2)
A 		4
(3)
A 		3
avr 4.8
(3) 		3.3
(0.7) 		0.9
(-3) 		3.3
(0.7) 		3
(0.2) 		3.8
(1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3020
Sequence Type Exemplar sequence
Representative Public ID F37H8.2 NCBI
Target Description F37H8.2 /REP_DB=WormBase Gene ID /WP=CE23705 /TR=O17864 /GB=CAB04348.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063992 NCBI Caenorhabditis elegans F37H8.2 (F37H8.2) mRNA, complete cds. 11/11 None
SNAP00000026654 ENSEMBL cdna:SNAP chromosome:CEL140:II:11171655:11172966:-1 11/11 None
GENEFINDER00000026658 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11171655:11173029:-1 11/11 None
F37H8.2 ENSEMBL cdna:known chromosome:CEL140:II:11171655:11175391:-1 gene:F37H8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11171651-11175388(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37H8.2
Entrez Gene 185431 Entrez gene
SwissProt O17864 EMBL-EBI
WormBase CE23705 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87377 Hypothetical protein F37H8.2 [Caenorhabditis elegans] emb|CAB04348.2| Hypothetical protein F37H8.2 [Caenorhabditis elegans] ref|NP_496393.1| F37H8.2 [Caenorhabditis elegans] 0.0
blast CAA87377 Hypothetical protein F37H8.2 [Caenorhabditis elegans] emb|CAB04348.2| Hypothetical protein F37H8.2 [Caenorhabditis elegans] ref|NP_496393.1| F37H8.2 [Caenorhabditis elegans] 1.0E-128
blast CAA87377 Hypothetical protein F37H8.2 [Caenorhabditis elegans] emb|CAB04348.2| Hypothetical protein F37H8.2 [Caenorhabditis elegans] ref|NP_496393.1| F37H8.2 [Caenorhabditis elegans] 1.0E-117
blast CAB54500 Hypothetical protein Y75B8A.35a [Caenorhabditis elegans] ref|NP_499602.3| bZIP transcription factor family member (zip-1) [Caenorhabditis elegans] 4.0E-29
blast AAD43348 DNA-binding protein ZIP-1 [Caenorhabditis elegans] 4.0E-29
blast CAB54500 Hypothetical protein Y75B8A.35a [Caenorhabditis elegans] ref|NP_499602.3| bZIP transcription factor family member (zip-1) [Caenorhabditis elegans] 2.0E-28
blast AAD43348 DNA-binding protein ZIP-1 [Caenorhabditis elegans] 2.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496393.1 2 49-71,78-97
F37H8.2 2 49-71,78-97
Sequence
Target Sequence 
>C. ELEGANS:177404_AT
ccagcagcgacgaaggagcacagaaagttcagagcaccctcattccgaaaatgagacgtc
aacggatgacaaaggcccaaatgagtctaatgaccgatgaggaaaaggtcgagaggagaa
agaatcaaaatcgcaactattcgaaaacgcatgttcaaaaacggaatcgtggtaaaatgg
agttgaaagagatgaacagcacctcagaagaacgtcttcaccatgctaggattcgaaatg
cttcacaagaagattatcttgtgaattgttttgaaaaccgcacaatagacggaaatcttg
gaggtgtggaagaattgaaaatggaattggaaggtgctaaacaagaaacaatacaacgca
ttcgactagaaaattcggatgatttggagaatactcaaaagatgatagaaacagccaaag
ccaaattcgatcagctacgtgccataaatggaatgccgggaattgctcaaagcaccttcg
actctcgaaagtcacgagcaaaaacggcttacgagatagctgactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCAGCGACGAAGGAGCACAGAA 69 273 1478 Antisense
TTCAGAGCACCCTCATTCCGAAAAT 638 685 1505 Antisense
AAGGCCCAAATGAGTCTAATGACCG 7 157 1549 Antisense
AACAGCACCTCAGAAGAACGTCTTC 563 135 1672 Antisense
GAACGTCTTCACCATGCTAGGATTC 135 349 1687 Antisense
AACAATACAACGCATTCGACTAGAA 140 135 1824 Antisense
GCCAAATTCGATCAGCTACGTGCCA 198 277 1897 Antisense
AATGGAATGCCGGGAATTGCTCAAA 455 161 1924 Antisense
GAATTGCTCAAAGCACCTTCGACTC 677 323 1937 Antisense
GCACCTTCGACTCTCGAAAGTCACG 200 315 1949 Antisense
AACGGCTTACGAGATAGCTGACTAT 540 143 1980 Antisense
Sequence Source Affymetrix Proprietary Database