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[177403_at]

Description F58D5.6 /REP_DB=WormBase Gene ID /WP=CE25023 /TR=Q9NLD4 /GB=CAB70235.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 1.1
(-3)
A 		15.2
(-0.9)
A 		2.7
(-2.8)
A 		40.6
(3)
A 		40
B 1.5
(-3)
A 		2.1
(-2.9)
A 		1.6
(-3)
A 		33.8
(3)
A 		32
C 5.3
(-2.9)
A 		9.4
(-1.8)
A 		5
(-3)
A 		27.4
(3)
A 		22
avr 2.6
(-3) 		8.9
(-1.8) 		3.1
(-2.9) 		33.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.1
(-3)
A 		2.6
(-2.2)
A 		5.9
(3)
A 		2.4
(-2.5)
A 		4
(-0)
A 		4.4
(0.6)
A 		4
B 4.3
(3)
A 		2.1
(-2.1)
A 		1.9
(-2.5)
A 		2
(-2.3)
A 		1.7
(-3)
A 		2.7
(-0.7)
A 		3
C 1.1
(-3)
A 		4.3
(2.2)
A 		3.7
(1.2)
A 		3.1
(0.2)
A 		4.8
(3)
A 		3.1
(0.2)
A 		4
avr 2.5
(-3) 		3
(-0.7) 		3.8
(3) 		2.5
(-3) 		3.5
(1.6) 		3.4
(1.2) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.4
(-3)
A 		3.3
(0.2)
A 		0.7
(-2.7)
A 		5.9
(3)
A 		6
B 0.5
(-2.9)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		7.2
(3)
A 		7
C 1.8
(-2.8)
A 		2.7
(-0.9)
A 		1.7
(-3)
A 		4.6
(3)
A 		3
avr 0.9
(-3) 		2.2
(-1.4) 		0.9
(-3) 		5.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.9
(0.3)
A 		1.3
(3)
A 		0.6
(-1.7)
A 		1.2
(2.3)
A 		1.1
(1.7)
A 		1
B 1.5
(3)
A 		0.7
(-1.8)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.7
(-1.8)
A 		1
(0)
A 		1
C 0.4
(-3)
A 		1.3
(1.9)
A 		0.9
(-0.3)
A 		0.6
(-1.9)
A 		1.5
(3)
A 		1
(0.3)
A 		1
avr 0.8
(-0.6) 		1
(1.8) 		0.9
(0.6) 		0.6
(-3) 		1.1
(3) 		1
(1.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177403_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.610
Sequence Type Exemplar sequence
Representative Public ID F58D5.6 NCBI
Target Description F58D5.6 /REP_DB=WormBase Gene ID /WP=CE25023 /TR=Q9NLD4 /GB=CAB70235.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060644 NCBI Caenorhabditis elegans F58D5.6 (F58D5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000034704 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12042194:12045352:1 11/11 None
F58D5.6 ENSEMBL cdna:known chromosome:CEL140:I:12042194:12045352:1 gene:F58D5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034697 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12042124-12045283(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58D5.6
Entrez Gene 186500 Entrez gene
SwissProt Q9NLD4 EMBL-EBI
WormBase CE25023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70235 Hypothetical protein F58D5.6 [Caenorhabditis elegans] ref|NP_493045.1| F58D5.6 [Caenorhabditis elegans] 0.0
blast CAE64305 Hypothetical protein CBG08981 [Caenorhabditis briggsae] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-6
Sequence
Target Sequence 
>C. ELEGANS:177403_AT
gtcggacattcaatagtctctctgatctttggattgtgttccatgaagctaagaagattg
gattccatcgggaactggatgtagatgcggtggcaaagaaacttagtggatccacgactc
caaatggaaccgaggagtttttgaatcatctgaaggaagttggaagtctaaatttgaatt
tcaacatgcatttgacacgtgttttggtggcttcgatgatgatgaaggaggttaatggaa
cactggagaagatcttcaatccgaaggttgaggtggttaaggtggagaaggttggggtaa
ttggtataggtatgagctcatcctataaatggtatcgtttcgtggtttctcatcctcaag
aatttacacttgtatttttattcgttgcatttcccgtcggaatatggctatttgatcgca
gagagaaccagaagaacattccatttatatttgcacccagtggctctactaacaccaaat
tttacgatttcagcgccaaaattccgacatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGACATTCAATAGTCTCTCTGA 104 473 1832 Antisense
GTCTCTCTGATCTTTGGATTGTGTT 293 471 1847 Antisense
GGGAACTGGATGTAGATGCGGTGGC 22 495 1901 Antisense
GAAACTTAGTGGATCCACGACTCCA 266 355 1929 Antisense
GACACGTGTTTTGGTGGCTTCGATG 374 367 2025 Antisense
TGGTATCGTTTCGTGGTTTCTCATC 682 551 2161 Antisense
TTTTTATTCGTTGCATTTCCCGTCG 501 675 2206 Antisense
GAACATTCCATTTATATTTGCACCC 373 351 2265 Antisense
TATTTGCACCCAGTGGCTCTACTAA 217 661 2279 Antisense
GGCTCTACTAACACCAAATTTTACG 454 501 2293 Antisense
TTTCAGCGCCAAAATTCCGACATTA 121 673 2319 Antisense
Sequence Source Affymetrix Proprietary Database