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[177401_at]

Description F58G1.6 /REP_DB=WormBase Gene ID /WP=CE17926 /TR=O62274 /GB=CAB04523.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 59      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 761
1 2 3 4 range
A 486.6
(0.4)
P 		817.4
(3)
P 		651.2
(1.7)
P 		56.4
(-3)
A 		761
B 452.6
(1.2)
P 		606.1
(3)
P 		607.5
(3)
P 		80.7
(-3)
A 		527
C 550.8
(1.6)
P 		690.3
(3)
P 		669.4
(2.8)
P 		79.2
(-3)
A 		611
avr 496.7
(1) 		704.6
(3) 		642.7
(2.4) 		72.1
(-3) 		633

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 428.8
(2.6)
P 		429.8
(2.6)
P 		280.3
(-2)
P 		441.6
(3)
P 		437.1
(2.9)
P 		247.2
(-3)
P 		194
B 520.3
(2.3)
P 		418.6
(0.6)
P 		329.9
(-0.9)
P 		409.4
(0.4)
P 		564.4
(3)
P 		200.5
(-3)
P 		364
C 500.4
(3)
P 		412.8
(1.4)
P 		426.8
(1.7)
P 		304.7
(-0.5)
P 		491.5
(2.8)
P 		169.6
(-3)
P 		331
avr 483.2
(2.7) 		420.4
(1.4) 		345.7
(-0.1) 		385.2
(0.7) 		497.7
(3) 		205.8
(-3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 177.2
(3)
P 		177.4
(3)
P 		170.2
(2.7)
P 		8.3
(-3)
A 		169
B 144.3
(2.8)
P 		149.7
(3)
P 		140.8
(2.6)
P 		17.2
(-3)
A 		133
C 182.3
(1.6)
P 		198.5
(2.1)
P 		233.3
(3)
P 		13.3
(-3)
A 		220
avr 167.9
(2.5) 		175.2
(2.8) 		181.4
(3) 		12.9
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 79.1
(-1.8)
P 		152.9
(3)
P 		61.1
(-2.9)
P 		112
(0.4)
P 		131.9
(1.6)
P 		60.2
(-3)
P 		93
B 181.1
(1.1)
P 		139.3
(-0.5)
P 		80.1
(-2.8)
P 		108.4
(-1.7)
P 		229.3
(3)
P 		74.8
(-3)
P 		155
C 185.5
(3)
P 		125.9
(0.2)
P 		108.6
(-0.6)
P 		61.3
(-2.8)
P 		159
(1.8)
P 		56.8
(-3)
P 		129
avr 148.6
(1.6) 		139.4
(1.1) 		83.3
(-1.9) 		93.9
(-1.4) 		173.4
(3) 		63.9
(-3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177401_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3880
Sequence Type Exemplar sequence
Representative Public ID F58G1.6 NCBI
Target Description F58G1.6 /REP_DB=WormBase Gene ID /WP=CE17926 /TR=O62274 /GB=CAB04523.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064356 NCBI Caenorhabditis elegans F58G1.6 (F58G1.6) mRNA, complete cds. 11/11 None
SNAP00000003693 ENSEMBL cdna:SNAP chromosome:CEL140:II:12941652:12943708:1 11/11 None
GENEFINDER00000003699 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12939177:12943708:1 11/11 None
F58G1.6 ENSEMBL cdna:known chromosome:CEL140:II:12938766:12943764:1 gene:F58G1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12939884-12943705(+) 99.75 99.75
Public Domain and Genome References
Gene Title
Ensembl F58G1.6
Entrez Gene 174936 Entrez gene
SwissProt O62274 EMBL-EBI
WormBase CE35563 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04523 Hypothetical protein F58G1.6 [Caenorhabditis elegans] ref|NP_496757.2| F58G1.6 [Caenorhabditis elegans] 0.0
blast CAE59398 Hypothetical protein CBG02761 [Caenorhabditis briggsae] 0.0
blast CAB04523 Hypothetical protein F58G1.6 [Caenorhabditis elegans] ref|NP_496757.2| F58G1.6 [Caenorhabditis elegans] 1.0E-166
blast CAE59398 Hypothetical protein CBG02761 [Caenorhabditis briggsae] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 8.4E-17
Pfam IPR000698 EMBL-EBI Arrestin 8.4E-17
Pfam IPR000698 EMBL-EBI Arrestin 8.4E-17
Sequence
Target Sequence 
>C. ELEGANS:177401_AT
agcaatcctatcaaacacgtcgccttggagctccggcagcatattttatacgccagtggt
gatgctcagaggagcgacactcgtctcatcacccgactgattcttggctccgtgcctccg
acagaaacattcgcagtgtttcactcttttcaagtaccattcgattgttacccatcactt
gtttggaatgggaaccctgttcaggtaacctacgagcttttgcttaccaactcgggatgc
tttgaaattggaacaccagtcttcttgggtaactacggatcacctaactcaactaggaga
tctattatgtaccccgaatccacgtctggagaagctccaccatcaaccacctactactgc
gtccccccaagcgagatgagcttcaccgtcgacccaccgccctactcaacgttcggcgca
aaaaccgaccccgtcttcatcccaatccacatgctcaagaccccgtaccgcccgtttgct
ccggcctatcacatgttccgtaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAATCCTATCAAACACGTCGCCT 123 77 607 Antisense
AGCTCCGGCAGCATATTTTATACGC 112 81 635 Antisense
TGCTCAGAGGAGCGACACTCGTCTC 55 581 669 Antisense
TCCGTGCCTCCGACAGAAACATTCG 391 595 715 Antisense
GTTTCACTCTTTTCAAGTACCATTC 29 451 744 Antisense
GTACCATTCGATTGTTACCCATCAC 83 459 760 Antisense
ACCTACGAGCTTTTGCTTACCAACT 463 85 814 Antisense
GGAACACCAGTCTTCTTGGGTAACT 209 529 856 Antisense
AACTACGGATCACCTAACTCAACTA 297 139 877 Antisense
AAGCGAGATGAGCTTCACCGTCGAC 407 149 975 Antisense
TCCGGCCTATCACATGTTCCGTAAC 229 593 1086 Antisense
Sequence Source Affymetrix Proprietary Database