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[177399_at]

Description C11H1.7 /REP_DB=WormBase Gene ID /WP=CE18492 /TR=Q17915 /GB=CAA20327.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 70      6grp_total > 32      4grp_total > 30      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 214.1
(0.5)
P 		178.6
(-1)
P 		130.5
(-3)
P 		274.9
(3)
P 		144
B 228
(1.3)
P 		201.1
(-0.7)
P 		170.8
(-3)
P 		250.5
(3)
P 		80
C 348.9
(3)
P 		199.1
(-2.3)
P 		186.7
(-2.7)
P 		178.8
(-3)
P 		170
avr 263.7
(3) 		192.9
(-1.2) 		162.7
(-3) 		234.7
(1.3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 284.6
(-0.3)
P 		329
(0.5)
P 		473.7
(3)
P 		313
(0.2)
P 		179.1
(-2.1)
P 		126.8
(-3)
P 		347
B 352
(0.5)
P 		338.6
(0.2)
P 		474.4
(3)
P 		206.2
(-2.5)
P 		183.7
(-3)
P 		209.9
(-2.5)
P 		291
C 307
(0.6)
P 		397.7
(3)
P 		212.9
(-1.8)
P 		261.8
(-0.6)
P 		168.4
(-3)
P 		226.2
(-1.5)
P 		229
avr 314.5
(0.9) 		355.1
(2.1) 		387
(3) 		260.3
(-0.6) 		177.1
(-3) 		187.6
(-2.7) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 77.9
(3)
P 		38.8
(-2.4)
P 		34.1
(-3)
P 		40.2
(-2.2)
P 		44
B 72.7
(3)
P 		49.7
(-1.2)
P 		39.6
(-3)
P 		53.4
(-0.5)
P 		33
C 115.5
(3)
P 		57.2
(-1.1)
P 		65.1
(-0.5)
P 		30.1
(-3)
P 		85
avr 88.7
(3) 		48.6
(-2.1) 		46.3
(-2.4) 		41.2
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 52.5
(-1.5)
P 		117
(3)
P 		103.2
(2)
P 		79.4
(0.4)
P 		54.1
(-1.4)
P 		30.9
(-3)
P 		86
B 122.5
(3)
P 		112.7
(2.1)
P 		115.2
(2.4)
P 		54.6
(-3)
P 		74.6
(-1.2)
P 		78.3
(-0.9)
P 		68
C 113.8
(2.3)
P 		121.4
(3)
P 		54.2
(-2.9)
P 		52.6
(-3)
P 		54.5
(-2.8)
P 		75.7
(-1)
P 		69
avr 96.3
(0.8) 		117
(3) 		90.9
(0.2) 		62.2
(-2.9) 		61.1
(-3) 		61.6
(-2.9) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17628
Sequence Type Exemplar sequence
Representative Public ID C11H1.7 NCBI
Target Description C11H1.7 /REP_DB=WormBase Gene ID /WP=CE18492 /TR=Q17915 /GB=CAA20327.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077988 NCBI Caenorhabditis elegans C11H1.7 (C11H1.7) mRNA, complete cds. 11/11 None
C11H1.7 ENSEMBL cdna:known chromosome:CEL140:X:14327691:14330054:1 gene:C11H1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018168 4/11 Cross Hyb Matching Probes None
SNAP00000021043 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14327690-14330054(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C11H1.7
Entrez Gene 182526 Entrez gene
SwissProt Q17915 EMBL-EBI
WormBase CE18492 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.3508.1.S1_S_AT similar to trinucleotide repeat containing 5 isoform 1 cfa
HG-U133A:217931_AT trinucleotide repeat containing 5 hs
HG-U133_PLUS_2:217931_AT trinucleotide repeat containing 5 hs
HG-FOCUS:217931_AT trinucleotide repeat containing 5 hs
HG-U133A_2:217931_AT trinucleotide repeat containing 5 hs
HU35KSUBC:RC_AA432058_AT trinucleotide repeat containing 5 hs
HU35KSUBC:RC_AA426124_AT trinucleotide repeat containing 5 hs
HU35KSUBD:RC_W69641_S_AT trinucleotide repeat containing 5 hs
U133_X3P:G13325207_3P_X_AT trinucleotide repeat containing 5 hs
U133_X3P:G13325207_3P_AT trinucleotide repeat containing 5 hs
U133_X3P:HS2.56828.4.S1_3P_AT trinucleotide repeat containing 5 hs
U133_X3P:HS2.56828.1.S1_3P_S_AT trinucleotide repeat containing 5 hs
U133_X3P:HS.56828.1.S1_3P_AT trinucleotide repeat containing 5 hs
HG-U133_PLUS_2:1552977_A_AT trinucleotide repeat containing 5 hs
HG-U133_PLUS_2:1556389_AT trinucleotide repeat containing 5 hs
HG-U133_PLUS_2:228369_AT trinucleotide repeat containing 5 hs
HG-U133B:228369_AT trinucleotide repeat containing 5 hs
HG-U95AV2:39280_AT trinucleotide repeat containing 5 hs
HG-U95B:45819_AT trinucleotide repeat containing 5 hs
HG-U95B:50748_AT trinucleotide repeat containing 5 hs
HG-U95C:59607_F_AT trinucleotide repeat containing 5 hs
HG-U95C:63729_F_AT trinucleotide repeat containing 5 hs
HU35KSUBB:RC_AA065262_AT Trinucleotide repeat containing 5 hs
MG-U74BV2:109733_AT trinucleotide repeat containing 5 mm
MG-U74BV2:162773_AT trinucleotide repeat containing 5 mm
MOE430A:1426479_A_AT trinucleotide repeat containing 5 mm
MOUSE430A_2:1426479_A_AT trinucleotide repeat containing 5 mm
MOUSE430_2:1426479_A_AT trinucleotide repeat containing 5 mm
MU19KSUBA:TC14554_AT Trinucleotide repeat containing 5 (Tnrc5), mRNA mm
MU19KSUBA:TC14554_G_AT Trinucleotide repeat containing 5 (Tnrc5), mRNA mm
MU19KSUBB:TC34783_AT Trinucleotide repeat containing 5 (Tnrc5), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA94121 Hypothetical protein C11H1.7 [Caenorhabditis elegans] emb|CAA20327.1| Hypothetical protein C11H1.7 [Caenorhabditis elegans] ref|NP_510389.1| C11H1.7 [Caenorhabditis elegans] 1.0E-101
blast CAE63004 Hypothetical protein CBG07243 [Caenorhabditis briggsae] 7.0E-57
blast EAA05223 ENSANGP00000012628 [Anopheles gambiae str. PEST] ref|XP_309508.2| ENSANGP00000012628 [Anopheles gambiae str. PEST] 9.0E-26
Sequence
Target Sequence 
>C. ELEGANS:177399_AT
gaagttgtatctattgattcctctatatttacttgccgaatttgcaaagtgtaatacaga
tacaacatttatgccaactaaatgcgagatatgtgctttgacaagtatggagttcgaagc
aaaatccgtgaaagtccacaagcaaacacggttaaaatttttgttcatatggtttttttt
atttcagagactttcatcggaatttgctgacatcactgaaaatatctgtaacggtttcaa
tgagtttaaaatacataaggaaaaaactggtctggaaaggttttcaagagctcagtcaaa
aactattgaaacattaaaacaaatgcgggagaagggagtgaaggttgaactcggcatgcc
attcgaaatgtgggatcaaccatctgcggaaatttttgcacttcgacaaggatgcgagtc
ccttcttgaagactatgaagatctcattgaagaatggtttattaacaaagcaagtctaga
agatctcttcaaacaactatgtgctcgtaatgctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTGTATCTATTGATTCCTCTA 485 337 18 Antisense
GATTCCTCTATATTTACTTGCCGAA 433 433 33 Antisense
GAAAGTCCACAAGCAAACACGGTTA 329 361 147 Antisense
CATCGGAATTTGCTGACATCACTGA 592 211 212 Antisense
GAAAGGTTTTCAAGAGCTCAGTCAA 33 361 292 Antisense
TGAAGGTTGAACTCGGCATGCCATT 394 575 356 Antisense
ATGTGGGATCAACCATCTGCGGAAA 128 51 385 Antisense
TCTGCGGAAATTTTTGCACTTCGAC 407 609 400 Antisense
GCACTTCGACAAGGATGCGAGTCCC 648 313 415 Antisense
GATGCGAGTCCCTTCTTGAAGACTA 372 413 428 Antisense
ACAACTATGTGCTCGTAATGCTCTG 627 111 510 Antisense
Sequence Source Affymetrix Proprietary Database