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[177397_at] G-protein coupled receptor, srg family

Description T21C9.7 /REP_DB=WormBase Gene ID /WP=CE06476 /TR=Q22642 /GB=CAA97334.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 03      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 17.3
(-2.4)
A 		15.5
(-2.5)
A 		4
(-3)
A 		130.4
(3)
P 		126
B 24.6
(-1.7)
A 		4.7
(-2.9)
A 		2.2
(-3)
A 		108.6
(3)
P 		106
C 3.5
(-3)
A 		3.3
(-3)
A 		2.8
(-3)
A 		186.9
(3)
P 		184
avr 15.1
(-2.5) 		7.8
(-2.8) 		3
(-3) 		142
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 10.8
(-2.7)
A 		4
(-3)
A 		18.9
(-2.3)
A 		3.3
(-3)
A 		36.4
(-1.5)
A 		140
(3)
P 		137
B 14.6
(-2.5)
A 		27.1
(-2)
A 		2.1
(-3)
A 		2.7
(-3)
A 		32.2
(-1.8)
A 		152.3
(3)
P 		150
C 1.7
(-3)
A 		66.3
(-0.3)
A 		6.6
(-2.8)
A 		12.4
(-2.6)
A 		18.9
(-2.3)
A 		146
(3)
P 		144
avr 9
(-2.9) 		32.5
(-1.9) 		9.2
(-2.9) 		6.1
(-3) 		29.2
(-2) 		146.1
(3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 6.3
(-1.2)
A 		3.4
(-2.2)
A 		1
(-3)
A 		19.1
(3)
P 		18
B 7.8
(-1.1)
A 		1.2
(-2.8)
A 		0.5
(-3)
A 		23.1
(3)
P 		23
C 1.2
(-3)
A 		1
(-3)
A 		1
(-3)
A 		31.5
(3)
P 		31
avr 5.1
(-1.9) 		1.9
(-2.7) 		0.8
(-3) 		24.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 2
(-2.8)
A 		1.4
(-2.9)
A 		4.1
(-2.4)
A 		0.8
(-3)
A 		11
(-1.2)
A 		34.1
(3)
P 		33
B 5.1
(-2.5)
A 		9
(-2.1)
A 		0.5
(-3)
A 		0.7
(-3)
A 		13.1
(-1.7)
A 		56.8
(3)
P 		56
C 0.6
(-3)
A 		20.2
(-0.6)
A 		1.7
(-2.9)
A 		2.5
(-2.8)
A 		6.1
(-2.3)
A 		48.9
(3)
P 		48
avr 2.6
(-2.8) 		10.2
(-1.8) 		2.1
(-2.9) 		1.3
(-3) 		10.1
(-1.8) 		46.6
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11791
Sequence Type Exemplar sequence
Representative Public ID T21C9.7 NCBI
Target Description T21C9.7 /REP_DB=WormBase Gene ID /WP=CE06476 /TR=Q22642 /GB=CAA97334.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073315 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-32) (srg-32) mRNA, complete cds. 11/11 None
SNAP00000011987 ENSEMBL cdna:SNAP chromosome:CEL140:V:10589749:10590680:-1 10/11 None
GENEFINDER00000011994 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10589749:10592440:-1 11/11 None
T21C9.7 ENSEMBL cdna:known chromosome:CEL140:V:10589749:10591376:-1 gene:T21C9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10589854-10591376(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srg family
Gene Symbol srg-32
Ensembl T21C9.7
Entrez Gene 188687 Entrez gene
SwissProt Q22642 EMBL-EBI
WormBase CE33188 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97334 Hypothetical protein T21C9.7 [Caenorhabditis elegans] ref|NP_505716.2| Serpentine Receptor, class G (gamma) family member (srg-32) [Caenorhabditis elegans] 1.0E-170
blast CAE64853 Hypothetical protein CBG09649 [Caenorhabditis briggsae] 1.0E-111
blast CAA97334 Hypothetical protein T21C9.7 [Caenorhabditis elegans] ref|NP_505716.2| Serpentine Receptor, class G (gamma) family member (srg-32) [Caenorhabditis elegans] 1.0E-110
blast CAA97335 Hypothetical protein T21C9.8 [Caenorhabditis elegans] ref|NP_505717.1| T21C9.8 [Caenorhabditis elegans] 5.0E-76
blast CAE64853 Hypothetical protein CBG09649 [Caenorhabditis briggsae] 7.0E-67
blast AAC47993 Serpentine receptor, class g (gamma) protein 33 [Caenorhabditis elegans] ref|NP_505140.1| Serpentine Receptor, class G (gamma) family member (srg-33) [Caenorhabditis elegans] sp|O01538|SRG33_CAEEL Serpentine receptor class gamma-33 (Protein srg-33) 2.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 3.7E-55
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505716.2 6 4-26,38-60,90-112,132-151,181-203,216-238
T21C9.7 6 4-26,38-60,90-112,132-151,181-203,216-238
SNAP00000011987 3 32-54,83-105,118-140
GENEFINDER00000011994 6 177-199,212-234,264-286,306-325,355-377,390-412
Sequence
Target Sequence 
>C. ELEGANS:177397_AT
gtattctttaccattcactattgcatggcattcattcagtatttcatgacatttttatct
tctctcaaccgtttgacgatggtattttttgttgacagttatgagaaaatatggcgcccg
agtcttcctttccttattatgatagttattatattccctatgattatgacatggccaatt
gcgacaaacaacgcatactttatctattctccaacattgggaggatttgcaacaaaaact
gtagccaactcaacagaagtgctaaactcgctagtcacattcatgatagtttttacatta
tttaccgcaactgcaaacattgtctcaataattcgtctgactcttcttccaacaaggatc
agtggtgcagagagaaatctgtttactgtcagctttgtttcgttcattattcagctatta
gctctcggagatacgttgattcttcgcgccgcaccatcagaaggaatgtcagtcggagcc
caaactgcaaaagcattgatgccttttgttagtgacatactcactttcaatcatccatgg
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCTTTACCATTCACTATTGCA 559 451 283 Antisense
GAGTCTTCCTTTCCTTATTATGATA 684 399 402 Antisense
ACGCATACTTTATCTATTCTCCAAC 147 91 473 Antisense
GAAGTGCTAAACTCGCTAGTCACAT 555 335 538 Antisense
TACCGCAACTGCAAACATTGTCTCA 641 649 585 Antisense
AATAATTCGTCTGACTCTTCTTCCA 367 171 609 Antisense
TACTGTCAGCTTTGTTTCGTTCATT 625 647 666 Antisense
CGGAGATACGTTGATTCTTCGCGCC 574 243 708 Antisense
GCGCCGCACCATCAGAAGGAATGTC 16 289 728 Antisense
ATGTCAGTCGGAGCCCAAACTGCAA 167 49 748 Antisense
TACTCACTTTCAATCATCCATGGAC 107 647 800 Antisense
Sequence Source Affymetrix Proprietary Database