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[177396_at]

Description ZK593.8 /REP_DB=WormBase Gene ID /WP=CE06629 /TR=Q23544 /GB=CAA93429.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 83      6grp_total > 77      4grp_total > 14      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 561.8
(3)
P 		291.8
(-1.8)
P 		226.8
(-3)
P 		527.7
(2.4)
P 		335
B 455.3
(0.1)
P 		296.4
(-2.3)
P 		245.4
(-3)
P 		656
(3)
P 		411
C 553.3
(2)
P 		205.2
(-3)
P 		302.7
(-1.6)
P 		622.1
(3)
P 		417
avr 523.5
(1.6) 		264.5
(-2.9) 		258.3
(-3) 		601.9
(3) 		344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 449.2
(-2.2)
P 		449
(-2.2)
P 		427.1
(-3)
P 		465.7
(-1.6)
P 		441
(-2.5)
P 		589.1
(3)
P 		162
B 412.5
(-1.8)
P 		369.3
(-3)
P 		374.6
(-2.9)
P 		404.9
(-2)
P 		453.1
(-0.6)
P 		581.4
(3)
P 		212
C 355.8
(-3)
P 		384.6
(-2.5)
P 		411.6
(-2)
P 		437.4
(-1.5)
P 		408.1
(-2)
P 		675.9
(3)
P 		320
avr 405.8
(-2.9) 		401
(-3) 		404.4
(-2.9) 		436
(-2) 		434.1
(-2.1) 		615.5
(3) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 204.6
(3)
P 		63.3
(-2.8)
P 		59.3
(-3)
P 		77.2
(-2.3)
P 		145
B 145.2
(3)
P 		73.2
(-1.9)
P 		56.9
(-3)
P 		139.8
(2.6)
P 		88
C 183.2
(3)
P 		59
(-3)
P 		105.5
(-0.8)
P 		104.9
(-0.8)
P 		124
avr 177.7
(3) 		65.2
(-3) 		73.9
(-2.5) 		107.3
(-0.8) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 82.8
(-3)
P 		159.7
(3)
P 		93
(-2.2)
P 		118.1
(-0.2)
P 		133.1
(0.9)
P 		143.4
(1.7)
P 		77
B 143.5
(-0.5)
P 		122.9
(-1.5)
P 		91
(-3)
P 		107.3
(-2.2)
P 		184.1
(1.4)
P 		216.8
(3)
P 		126
C 131.9
(-1.1)
P 		117.4
(-1.7)
P 		104.8
(-2.3)
P 		88
(-3)
P 		132.1
(-1.1)
P 		226.3
(3)
P 		138
avr 119.4
(-1.6) 		133.3
(-0.8) 		96.3
(-3) 		104.5
(-2.5) 		149.8
(0.2) 		195.5
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8364
Sequence Type Exemplar sequence
Representative Public ID ZK593.8 NCBI
Target Description ZK593.8 /REP_DB=WormBase Gene ID /WP=CE06629 /TR=Q23544 /GB=CAA93429.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069635 NCBI Caenorhabditis elegans ZK593.8 (ZK593.8) mRNA, complete cds. 11/11 None
SNAP00000042098 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10937246:10939770:1 11/11 None
GENEFINDER00000042100 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10937442:10939770:1 11/11 None
ZK593.8 ENSEMBL cdna:known chromosome:CEL140:IV:10937424:10939902:1 gene:ZK593.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10937447-10939776(+) 99.16 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK593.8
Entrez Gene 177990 Entrez gene
SwissProt Q23544 EMBL-EBI
WormBase CE28722 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588994_AT similar to Huntingtin interacting protein E cfa
CANINE_2:CFA.19679.1.S1_AT similar to Huntingtin interacting protein E cfa
CANINE_2:CFAAFFX.17726.1.S1_AT similar to Huntingtin interacting protein E cfa
DROSOPHILA_2:1632928_AT dm
DROSGENOME1:141273_AT dm
CHICKEN:GGA.8123.1.S1_AT similar to Huntingtin interacting protein E; huntingtin interactor protein E gga
HG-U133A:219910_AT Huntingtin interacting protein E hs
HG-U133_PLUS_2:219910_AT Huntingtin interacting protein E hs
HG-FOCUS:219910_AT Huntingtin interacting protein E hs
HG-U133A_2:219910_AT Huntingtin interacting protein E hs
U133_X3P:G13027623_3P_AT Huntingtin interacting protein E hs
HG-U95AV2:33556_AT Huntingtin interacting protein E hs
HG-U95B:46995_AT Huntingtin interacting protein E hs
HU35KSUBC:RC_N64599_AT Huntingtin interacting protein E hs
MG-U74AV2:103476_AT DNA segment, Chr 5, ERATO Doi 40, expressed mm
MU11KSUBA:AA189412_S_AT DNA segment, Chr 5, ERATO Doi 40, expressed mm
MOE430A:1454796_AT DNA segment, Chr 5, ERATO Doi 40, expressed mm
MOUSE430A_2:1454796_AT DNA segment, Chr 5, ERATO Doi 40, expressed mm
MOUSE430_2:1454796_AT DNA segment, Chr 5, ERATO Doi 40, expressed mm
RAE230B:1383978_AT Huntingtin interactor protein E rn
RAT230_2:1383978_AT Huntingtin interactor protein E rn
RAE230B:1393961_AT Huntingtin interactor protein E rn
RAT230_2:1393961_AT Huntingtin interactor protein E rn
RG-U34B:RC_AA926088_AT Huntingtin interactor protein E rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93429 Hypothetical protein ZK593.8 [Caenorhabditis elegans] ref|NP_502036.1| ZK593.8 [Caenorhabditis elegans] 0.0
blast CAE61963 Hypothetical protein CBG05963 [Caenorhabditis briggsae] 0.0
blast CAE50173 novel protein [Danio rerio] gb|AAH92885.1| Hypothetical protein LOC334648 [Danio rerio] ref|NP_001017794.1| hypothetical protein LOC334648 [Danio rerio] 1.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003812 EMBL-EBI Filamentation induced by cAMP protein Fic 5.2E-52
Pfam IPR003812 EMBL-EBI Filamentation induced by cAMP protein Fic 5.2E-52
Sequence
Target Sequence 
>C. ELEGANS:177396_AT
gttttctgaattgttctcttctttcaaaggaacatgatgaaatatcaattgatgatattc
tagaaatgcatcggagagttttgggaaatgctgatccagttgaagctggaagaattcgaa
cgactcaagtatacgtcggaagattcactcctgtttctcctgaatatgtgatggaacaat
tgaaggatatcgttgattggttaaatgatgaaagtacactaacaatagatccaattgaaa
gagcagctattgcacactataaacttgttttagtgcatccgttcactgatggaaatggta
gaaccgctaggttattgcttaatcttattatgatgagaagtggattcccacctgtaatat
taccagtcgagacacgtgccgaatattatgcatctcttcatgtagcaaatttaggagatc
tcagaccatttgtgagatacgttgcaaaacattccgaggcatcaattcaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTCTGAATTGTTCTCTTCTTTC 257 449 974 Antisense
ATACGTCGGAAGATTCACTCCTGTT 553 23 1104 Antisense
CACTCCTGTTTCTCCTGAATATGTG 23 199 1119 Antisense
AGCAGCTATTGCACACTATAAACTT 257 77 1215 Antisense
AACTTGTTTTAGTGCATCCGTTCAC 573 137 1235 Antisense
GAACCGCTAGGTTATTGCTTAATCT 586 343 1274 Antisense
GTGGATTCCCACCTGTAATATTACC 389 489 1313 Antisense
ATTACCAGTCGAGACACGTGCCGAA 316 11 1332 Antisense
GTGCCGAATATTATGCATCTCTTCA 305 479 1349 Antisense
GATACGTTGCAAAACATTCCGAGGC 80 423 1409 Antisense
ACATTCCGAGGCATCAATTCAACGA 47 105 1422 Antisense
Sequence Source Affymetrix Proprietary Database