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[177392_at]

Description F07H5.6 /REP_DB=WormBase Gene ID /WP=CE03155 /TR=Q19176 /GB=CAA92658.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 24.2
(-3)
A 		31.5
(-1.3)
A 		48.2
(2.7)
P 		49.6
(3)
A 		25
B 19.6
(-0.9)
A 		43.3
(3)
P 		17.1
(-1.3)
A 		6.8
(-3)
A 		37
C 21.9
(-1.7)
A 		55.1
(3)
P 		34.8
(0.1)
P 		13
(-3)
A 		42
avr 21.9
(-3) 		43.3
(3) 		33.4
(0.2) 		23.1
(-2.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 45.1
(3)
A 		19.1
(-1.9)
A 		23.4
(-1.1)
A 		14.2
(-2.8)
A 		33.1
(0.8)
P 		13
(-3)
A 		32
B 28.1
(-0.1)
P 		16.2
(-1.8)
A 		41.6
(2)
P 		40.5
(1.8)
M 		48.6
(3)
P 		8.5
(-3)
A 		40
C 26.2
(-2.4)
P 		34.4
(-1.3)
A 		68
(3)
P 		40.9
(-0.5)
A 		21.4
(-3)
P 		24.6
(-2.6)
A 		47
avr 33.1
(0.7) 		23.2
(-1.4) 		44.3
(3) 		31.9
(0.4) 		34.4
(0.9) 		15.4
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.8
(-0.9)
A 		6.8
(-3)
A 		12.6
(3)
P 		7.3
(-2.5)
A 		6
B 6.2
(0.1)
A 		10.7
(3)
P 		4
(-1.3)
A 		1.4
(-3)
A 		9
C 7.2
(-0.8)
A 		15.8
(3)
P 		12.1
(1.4)
P 		2.2
(-3)
A 		14
avr 7.4
(0) 		11.1
(3) 		9.6
(1.8) 		3.6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.3
(1.5)
A 		6.8
(0.2)
A 		5.1
(-1.3)
A 		3.6
(-2.6)
A 		10
(3)
P 		3.2
(-3)
A 		7
B 9.8
(-0.6)
P 		5.4
(-2.2)
A 		10.1
(-0.5)
P 		10.7
(-0.3)
M 		19.8
(3)
P 		3.2
(-3)
A 		17
C 9.7
(-1.4)
P 		10.5
(-0.9)
A 		17.3
(3)
P 		8.2
(-2.3)
A 		6.9
(-3)
P 		8.2
(-2.3)
A 		10
avr 9.3
(0.6) 		7.6
(-0.8) 		10.8
(1.8) 		7.5
(-0.9) 		12.2
(3) 		4.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2750
Sequence Type Exemplar sequence
Representative Public ID F07H5.6 NCBI
Target Description F07H5.6 /REP_DB=WormBase Gene ID /WP=CE03155 /TR=Q19176 /GB=CAA92658.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063470 NCBI Caenorhabditis elegans F07H5.6 (F07H5.6) mRNA, complete cds. 11/11 None
SNAP00000026206 ENSEMBL cdna:SNAP chromosome:CEL140:II:8791865:8792653:-1 11/11 None
GENEFINDER00000026212 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8791865:8792653:-1 11/11 None
F07H5.6 ENSEMBL cdna:known chromosome:CEL140:II:8791865:8792653:-1 gene:F07H5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8791861-8792650(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07H5.6
Entrez Gene 184163 Entrez gene
SwissProt Q19176 EMBL-EBI
WormBase CE03155 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495871.1 3 10-32,39-61,76-98
F07H5.6 3 10-32,39-61,76-98
SNAP00000026206 3 10-32,39-61,76-98
GENEFINDER00000026212 3 10-32,39-61,76-98
Sequence
Target Sequence 
>C. ELEGANS:177392_AT
ctcttcgcttcttgttgctattttattgattattccaacgatagttcagtcttgtggatt
cggtggttttggaggatatgggcttggattaggactgggttgtggcggaggattcggcgg
attttctggaggttatggtttaggttacggtggtggttttggtggatatggtggcggatt
tggaggttacggtctgggaggatatggactcggatacggtggatatggaatgtttggtag
tggatatggcggtggatgtggatattcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTCGCTTCTTGTTGCTATTTTA 96 231 18 Antisense
AGTTCAGTCTTGTGGATTCGGTGGT 160 45 60 Antisense
GGTGGTTTTGGAGGATATGGGCTTG 185 499 79 Antisense
GGGCTTGGATTAGGACTGGGTTGTG 83 493 97 Antisense
CTGGGTTGTGGCGGAGGATTCGGCG 320 235 112 Antisense
GGATTCGGCGGATTTTCTGGAGGTT 189 509 127 Antisense
GTGGCGGATTTGGAGGTTACGGTCT 167 493 188 Antisense
AGGTTACGGTCTGGGAGGATATGGA 374 1 201 Antisense
GAGGATATGGACTCGGATACGGTGG 414 403 215 Antisense
ATGTTTGGTAGTGGATATGGCGGTG 488 47 247 Antisense
ATGGCGGTGGATGTGGATATTCAAT 42 51 263 Antisense
Sequence Source Affymetrix Proprietary Database