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[177391_s_at]

Description R166.3 /REP_DB=WormBase Gene ID /WP=CE03582 /TR=Q22004 /GB=CAA90664.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 80      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 64      6grp_total > 30      4grp_total > 20      6grp_highest_sub > 04      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 728.5
(1.4)
P 		748
(2.1)
P 		600
(-3)
P 		775.1
(3)
P 		175
B 828.3
(-1.5)
P 		754.6
(-2.7)
P 		735.4
(-3)
P 		1097.3
(3)
P 		362
C 836.7
(-0.8)
P 		770.7
(-1.7)
P 		675.6
(-3)
P 		1111.4
(3)
P 		436
avr 797.8
(-0.6) 		757.8
(-1.4) 		670.3
(-3) 		994.6
(3) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 505.1
(-3)
P 		748.5
(0.4)
P 		862.6
(2)
P 		934
(3)
P 		774.5
(0.8)
P 		604.3
(-1.6)
P 		429
B 791.4
(0.6)
P 		893.8
(2.5)
P 		919.9
(3)
P 		643.3
(-2.1)
P 		898.4
(2.6)
P 		592.4
(-3)
P 		328
C 781.9
(-0.5)
P 		897.8
(1.4)
P 		692.8
(-1.9)
P 		995.1
(3)
P 		678.9
(-2.1)
P 		624.8
(-3)
P 		370
avr 692.8
(-0.9) 		846.7
(2.7) 		825.1
(2.2) 		857.5
(3) 		783.9
(1.2) 		607.2
(-3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 265.3
(3)
P 		162.4
(-1.1)
P 		156.9
(-1.3)
P 		113.5
(-3)
P 		152
B 264.2
(3)
P 		186.4
(-2)
P 		170.4
(-3)
P 		233.8
(1.1)
P 		94
C 277
(3)
P 		221.6
(-0.7)
P 		235.5
(0.2)
P 		187.4
(-3)
P 		90
avr 268.8
(3) 		190.1
(-2.2) 		187.6
(-2.4) 		178.2
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 93.1
(-3)
P 		266.2
(3)
P 		187.9
(0.3)
P 		236.9
(2)
P 		233.7
(1.9)
P 		147.1
(-1.1)
P 		173
B 275.4
(0.2)
P 		297.5
(0.9)
P 		223.4
(-1.4)
P 		170.4
(-3)
P 		365
(3)
P 		220.9
(-1.4)
P 		195
C 289.8
(3)
P 		273.9
(2.2)
P 		176.3
(-3)
P 		200.1
(-1.7)
P 		219.7
(-0.7)
P 		209.2
(-1.3)
P 		114
avr 219.4
(-1.1) 		279.2
(3) 		195.9
(-2.8) 		202.5
(-2.3) 		272.8
(2.6) 		192.4
(-3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177391_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2723
Sequence Type Exemplar sequence
Representative Public ID R166.3 NCBI
Target Description R166.3 /REP_DB=WormBase Gene ID /WP=CE03582 /TR=Q22004 /GB=CAA90664.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063869 NCBI Caenorhabditis elegans R166.3 (R166.3) mRNA, complete cds. 11/11 None
SNAP00000017513 ENSEMBL cdna:SNAP chromosome:CEL140:II:10537836:10539242:-1 11/11 None
GENEFINDER00000017522 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10537836:10539242:-1 11/11 None
R166.3 ENSEMBL cdna:known chromosome:CEL140:II:10537770:10539242:-1 gene:R166.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10537832-10539239(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R166.3
Entrez Gene 174621 Entrez gene
SwissProt Q22004 EMBL-EBI
WormBase CE03582 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14564_AT AMMECR1 family at
ATH1-121501:266416_AT AMMECR1 family at
CANINE_2:CFAAFFX.27720.1.S1_S_AT similar to AMME syndrome candidate gene 1 protein cfa
DROSOPHILA_2:1638044_A_AT dm
DROSGENOME1:141778_AT dm
CHICKEN:GGAAFFX.5069.1.S1_AT similar to AMMECR1 protein gga
HG-U95AV2:32940_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133_PLUS_2:204976_S_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133A_2:204976_S_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-FOCUS:204976_S_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133A:204976_S_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HU35KSUBA:RC_AA252395_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HU35KSUBB:RC_N55443_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
U133_X3P:HS2.326142.1.S1_3P_S_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
U133_X3P:HS.326142.0.S2_3P_S_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
U133_X3P:HS.23625.0.A1_3P_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133_PLUS_2:1553219_A_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133_PLUS_2:226421_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133B:226421_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U95B:43455_R_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U95C:49524_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U95B:50933_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HU35KSUBB:RC_N29755_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
U133_X3P:HS.17643.0.A1_3P_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133_PLUS_2:236760_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133B:236760_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U95C:62618_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133_PLUS_2:236791_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133B:236791_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133_PLUS_2:237148_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U133B:237148_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U95D:70679_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U95D:72521_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
HG-U95E:74400_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
U133_X3P:HS.129076.0.A1_3P_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
U133_X3P:HS.222068.0.A1_3P_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 hs
MOUSE430_2:1430697_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) mm
MOE430B:1430697_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) mm
MOUSE430A_2:1450546_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) mm
MOUSE430_2:1450546_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) mm
MOE430A:1450546_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) mm
MU19KSUBA:TC25109_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human), mRNA (cDNA clone IMAGE:3674354) mm
MU19KSUBB:TC34343_AT Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human), mRNA (cDNA clone IMAGE:3674354) mm
Protein Similarities
Method ID Description E-Value
blast CAA90664 Hypothetical protein R166.3 [Caenorhabditis elegans] ref|NP_496270.1| R166.3 [Caenorhabditis elegans] sp|Q22004|AMER1_CAEEL Hypothetical protein R166.3 in chromosome II 1.0E-116
blast CAE59658 Hypothetical protein CBG03076 [Caenorhabditis briggsae] 3.0E-96
blast CAI41539 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 [Homo sapiens] emb|CAI42537.1| Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 [Homo sapiens] emb|CAI42703.1| Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 [Homo sapiens] 3.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002733 EMBL-EBI Protein of unknown function DUF51 3.9E-122
Sequence
Target Sequence 
>C. ELEGANS:177391_S_AT
tgacgtccgctaacatccaaatggcagtttactgctttgacgtcatcaacgcccaattga
atcgagagaaggaacctcccgtgccaaaagagatccctaatgtaaaattaccactatttg
tcacatggaagaagggacatcaacacgatttacgcggatgcattggaactttctctgatt
taagattgggtgaggggttaaacgaatatgcgaagaccagcgctttccatgattcacgat
tcaagccaattagccgggaagaagttccaagtttgcagtgcggagtttctcttctaataa
acttcgagccaattcataattttcgtgactggacaatcggtcgtcatggagttcgaatga
atttcgacgatggtcatcgcaatcggagtgccgttttcttgccggaagtagctcaagaac
aaggatggaatcatgtggagacaattgatcatttaataagaaaaagtggatacggaggac
atattaatgatgctcttcggtcagcacttcgaattgttcgcttccaaagctccaaacttg
ttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGTCCGCTAACATCCAAATGGC 139 569 14 Antisense
GCAGTTTACTGCTTTGACGTCATCA 697 311 37 Antisense
GACGTCATCAACGCCCAATTGAATC 25 377 52 Antisense
GGAACCTCCCGTGCCAAAAGAGATC 179 243 84 Antisense
CGCGGATGCATTGGAACTTTCTCTG 504 255 166 Antisense
ATATGCGAAGACCAGCGCTTTCCAT 457 21 219 Antisense
GCGCTTTCCATGATTCACGATTCAA 38 289 233 Antisense
GCAATCGGAGTGCCGTTTTCTTGCC 389 321 392 Antisense
TAATGATGCTCTTCGGTCAGCACTT 383 635 498 Antisense
CAGCACTTCGAATTGTTCGCTTCCA 670 203 515 Antisense
CGCTTCCAAAGCTCCAAACTTGTTC 520 247 532 Antisense
Sequence Source Affymetrix Proprietary Database