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[177390_at]

Description ZC53.4 /REP_DB=WormBase Gene ID /WP=CE24710 /TR=Q23371 /GB=AAB52621.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 01      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 0.6
(-3)
A 		2.2
(-0.9)
A 		5.2
(3)
A 		3.2
(0.4)
A 		5
B 4.7
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		2.5
(-1.1)
A 		3
C 1.2
(-2.9)
A 		1
(-3)
A 		1.8
(-2.7)
A 		17.7
(3)
A 		17
avr 2.2
(-2.4) 		1.6
(-3) 		2.8
(-1.8) 		7.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.9
(-3)
A 		0.8
(-3)
A 		15.6
(3)
A 		6.6
(-0.6)
A 		2.4
(-2.4)
A 		1.2
(-2.8)
A 		15
B 1.3
(-2.9)
A 		1.6
(-2.8)
A 		11.7
(0.7)
A 		18.3
(3)
A 		1.1
(-3)
A 		1.5
(-2.9)
A 		17
C 0.7
(-3)
A 		2
(-2.5)
A 		5.6
(-1.2)
A 		17
(3)
A 		0.9
(-2.9)
A 		7.6
(-0.5)
A 		16
avr 1
(-3) 		1.5
(-2.8) 		11
(1.6) 		14
(3) 		1.5
(-2.8) 		3.4
(-1.9) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.2
(-3)
A 		0.5
(-1.5)
A 		1.4
(3)
A 		0.5
(-1.5)
A 		1
B 1.5
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.5
(-2.5)
A 		1
C 0.4
(-2.8)
A 		0.3
(-3)
A 		0.6
(-2.3)
A 		3
(3)
A 		3
avr 0.7
(-1) 		0.4
(-3) 		0.8
(-0.3) 		1.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.3
(-2.8)
A 		3.4
(3)
A 		1.7
(-0.2)
A 		0.7
(-2.1)
A 		0.3
(-2.8)
A 		3
B 0.4
(-3)
A 		0.5
(-2.9)
A 		2.8
(0.3)
A 		4.8
(3)
A 		0.5
(-2.9)
A 		0.6
(-2.7)
A 		4
C 0.3
(-3)
A 		0.6
(-2.4)
A 		1.4
(-0.9)
A 		3.4
(3)
A 		0.3
(-3)
A 		2.6
(1.5)
A 		3
avr 0.3
(-3) 		0.5
(-2.6) 		2.5
(1.4) 		3.3
(3) 		0.5
(-2.6) 		1.2
(-1.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18109
Sequence Type Exemplar sequence
Representative Public ID ZC53.4 NCBI
Target Description ZC53.4 /REP_DB=WormBase Gene ID /WP=CE24710 /TR=Q23371 /GB=AAB52621.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075952 NCBI Caenorhabditis elegans ZC53.4 (ZC53.4) mRNA, complete cds. 11/11 None
SNAP00000009493 ENSEMBL cdna:SNAP chromosome:CEL140:X:1936739:1937683:1 11/11 None
ZC53.4 ENSEMBL cdna:known chromosome:CEL140:X:1925744:1937683:1 gene:ZC53.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1925743-1937683(+) 99.91 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC53.4
Entrez Gene 191069 Entrez gene
SwissProt Q23371 EMBL-EBI
WormBase CE24710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52621 Hypothetical protein ZC53.4 [Caenorhabditis elegans] ref|NP_508353.1| ZC53.4 [Caenorhabditis elegans] 0.0
blast CAE60370 Hypothetical protein CBG03970 [Caenorhabditis briggsae] 0.0
blast CAE69662 Hypothetical protein CBG15910 [Caenorhabditis briggsae] 1.0E-168
blast AAB52621 Hypothetical protein ZC53.4 [Caenorhabditis elegans] ref|NP_508353.1| ZC53.4 [Caenorhabditis elegans] 1.0E-163
blast CAE60370 Hypothetical protein CBG03970 [Caenorhabditis briggsae] 1.0E-134
blast CAE69070 Hypothetical protein CBG15088 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 0.0014
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508353.1 1 103-125
ZC53.4 1 103-125
Sequence
Target Sequence 
>C. ELEGANS:177390_AT
aatttccttttgtatctagatgctaacaatttgtatggatgggcaatgtgtcaaatgtta
cctactggagacttcaaatttgaaactcaatctttaataagtattctcaatggtgaagct
gaagtcaaatcggatctaaaggattatattaattatttgaagaagttagatagaggttgc
atatttgaagtagatttagaatatcccaaagaaatacactcaaggcataatgattctcct
ttgtgtccagagaatgtaaaaattgataatcacgttattaaaaagttgtgcaatacctta
tttgatagagagaagtatgtgatccattatgaaaatcttttacagtgtcttcaattagga
cttaagctgaagaaaattcataggatcattactttcaaggaaagcaattggttagcctca
tatattgaaatgaacacaaatcccaggaaaaatgctaaaaatgattttgagaaagacttt
tacaaattaatgaataatagtgtatttggaaaaactatggaaaatgtcagagaaagagtt
gatgtccgtttagttactgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCCTTTTGTATCTAGATGCTA 35 175 3619 Antisense
GGGCAATGTGTCAAATGTTACCTAC 365 493 3659 Antisense
ATGTTACCTACTGGAGACTTCAAAT 351 47 3673 Antisense
GAAGCTGAAGTCAAATCGGATCTAA 116 343 3733 Antisense
GGCATAATGATTCTCCTTTGTGTCC 511 537 3842 Antisense
AAAGTTGTGCAATACCTTATTTGAT 241 123 3900 Antisense
GAAAATCTTTTACAGTGTCTTCAAT 382 353 3949 Antisense
GTGTCTTCAATTAGGACTTAAGCTG 240 487 3963 Antisense
TTCATAGGATCATTACTTTCAAGGA 454 683 3995 Antisense
AAGCAATTGGTTAGCCTCATATATT 139 151 4020 Antisense
GTTGATGTCCGTTTAGTTACTGATG 525 437 4156 Antisense
Sequence Source Affymetrix Proprietary Database