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[177389_at]

Description F58E6.8 /REP_DB=WormBase Gene ID /WP=CE06023 /TR=Q20984 /GB=CAA94778.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 42.6
(2)
A 		5.3
(-2.9)
A 		4.6
(-3)
A 		50.1
(3)
A 		46
B 3.8
(-2.4)
A 		9.3
(3)
A 		3.2
(-3)
A 		5.4
(-0.8)
A 		6
C 15.9
(-3)
A 		50
(1.3)
A 		33.6
(-0.8)
A 		63.6
(3)
A 		48
avr 20.8
(-1.4) 		21.5
(-1.2) 		13.8
(-3) 		39.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 30.7
(1.5)
A 		11.9
(-1.7)
A 		27.6
(1)
A 		28.2
(1.1)
A 		39.1
(3)
A 		4.5
(-3)
A 		35
B 44.6
(3)
A 		42.7
(2.7)
A 		4.4
(-3)
A 		7.6
(-2.5)
A 		6.1
(-2.7)
A 		23
(-0.2)
A 		40
C 24.3
(2.6)
A 		20.9
(1.7)
A 		25.3
(2.9)
A 		4.4
(-3)
A 		25.6
(3)
A 		22.2
(2)
A 		21
avr 33.2
(3) 		25.2
(0.6) 		19.1
(-1.3) 		13.4
(-3) 		23.6
(0.1) 		16.6
(-2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.5
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		7.3
(-0.4)
A 		14
B 1.2
(-1.1)
A 		2.3
(3)
A 		0.7
(-3)
A 		1.2
(-1.1)
A 		2
C 5.3
(-3)
A 		14.4
(3)
A 		11.7
(1.2)
A 		10.7
(0.6)
A 		9
avr 7.3
(3) 		6
(0.2) 		4.5
(-3) 		6.4
(1.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.7
(-0.4)
A 		4.2
(-1.3)
A 		6
(-0.3)
A 		7.2
(0.4)
A 		11.8
(3)
A 		1.1
(-3)
A 		11
B 15.5
(3)
A 		14.2
(2.5)
A 		1.1
(-3)
A 		2
(-2.6)
A 		2.5
(-2.4)
A 		8.6
(0.1)
A 		14
C 9
(3)
A 		6.4
(1.1)
A 		6.4
(1.1)
A 		0.9
(-3)
A 		8.3
(2.5)
A 		7.4
(1.8)
A 		8
avr 10.1
(3) 		8.3
(1.4) 		4.5
(-2) 		3.4
(-3) 		7.5
(0.7) 		5.7
(-0.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11795
Sequence Type Exemplar sequence
Representative Public ID F58E6.8 NCBI
Target Description F58E6.8 /REP_DB=WormBase Gene ID /WP=CE06023 /TR=Q20984 /GB=CAA94778.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073116 NCBI Caenorhabditis elegans F58E6.8 (F58E6.8) mRNA, complete cds. 11/11 None
F58E6.8 ENSEMBL cdna:known chromosome:CEL140:V:9757659:9758391:-1 gene:F58E6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040375 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9757658-9758391(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E6.8
Entrez Gene 186527 Entrez gene
SwissProt Q20984 EMBL-EBI
WormBase CE06023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94778 Hypothetical protein F58E6.8 [Caenorhabditis elegans] ref|NP_505517.1| F58E6.8 [Caenorhabditis elegans] 9.0E-91
blast CAE72272 Hypothetical protein CBG19392 [Caenorhabditis briggsae] 4.0E-13
blast CAA94776 Hypothetical protein F58E6.6 [Caenorhabditis elegans] ref|NP_505515.1| F58E6.6 [Caenorhabditis elegans] 2.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505517.1 2 2-24,158-180
F58E6.8 2 2-24,158-180
Sequence
Target Sequence 
>C. ELEGANS:177389_AT
cttctggacaccttcgtcttgatataatttcatcaaataattgtgcactttgtctcatct
ccgaagatcttcagtcagaagttattcatttaaagataggcaattcagaaacttataatg
ttcaaactttggctaaagtttctatcaattttaatgttggagtcggaaaatctgcaacac
atacttttggaatgaaacctgttgggcaaaagactcgagatatttttgaatttggagaaa
tagttattcttgtgctctcaacttttgaatgtgatgaaggatttactgggtctgaatgtg
aactttttgatgccaataaaacctcgacaataatacctattccaattactactaaaatct
cttcacaagcgcaagaattattccgtatcgatagatcatcaatttccttcaacattatca
tttgcatcgttttggcatttatcgtcattgttttgttcctcatcacatatgctcttcact
cgacttttcggcgtcagagtttctacattgatccagttttctattgcgagtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTGGACACCTTCGTCTTGATAT 55 221 77 Antisense
TAATTGTGCACTTTGTCTCATCTCC 248 635 114 Antisense
GTCTCATCTCCGAAGATCTTCAGTC 604 469 128 Antisense
TTATTCTTGTGCTCTCAACTTTTGA 369 677 320 Antisense
CGATAGATCATCAATTTCCTTCAAC 476 247 465 Antisense
GCATCGTTTTGGCATTTATCGTCAT 710 303 500 Antisense
TATCGTCATTGTTTTGTTCCTCATC 361 659 516 Antisense
TTTTGTTCCTCATCACATATGCTCT 176 679 527 Antisense
GACTTTTCGGCGTCAGAGTTTCTAC 145 373 558 Antisense
GAGTTTCTACATTGATCCAGTTTTC 620 397 573 Antisense
GATCCAGTTTTCTATTGCGAGTCGC 239 415 586 Antisense
Sequence Source Affymetrix Proprietary Database