[Home] | [Total List]

[177388_at]

Description K05C4.3 /REP_DB=WormBase Gene ID /WP=CE21021 /TR=Q9XUU1 /GB=CAB04577.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 10.5
(0.5)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		17
(3)
A 		16
B 2
(-2.6)
A 		1.8
(-2.7)
A 		1.1
(-3)
A 		16.5
(3)
A 		15
C 1.9
(-2.9)
A 		0.8
(-3)
A 		1.4
(-2.9)
A 		62.1
(3)
A 		61
avr 4.8
(-2.3) 		1.5
(-3) 		1.3
(-3) 		31.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.6
(-3)
A 		1.6
(-3)
A 		2.5
(3)
A 		1.8
(-1.7)
A 		1.9
(-1)
A 		2.4
(2.3)
A 		1
B 0.7
(-3)
A 		1.4
(-2.6)
A 		8.3
(1.7)
A 		10.5
(3)
A 		0.9
(-2.9)
A 		0.9
(-2.9)
A 		10
C 11.8
(3)
A 		4
(-1.3)
A 		1.5
(-2.7)
A 		1.8
(-2.5)
A 		0.9
(-3)
A 		8.3
(1.1)
A 		11
avr 4.7
(3) 		2.3
(-1.1) 		4.1
(2) 		4.7
(3) 		1.2
(-3) 		3.9
(1.6) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.8
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2.5
(0.7)
A 		3
B 0.6
(-2.4)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		3.5
(3)
A 		3
C 0.6
(-2.8)
A 		0.2
(-3)
A 		0.5
(-2.8)
A 		10.5
(3)
A 		10
avr 1.7
(-1.4) 		0.3
(-3) 		0.4
(-2.9) 		5.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.6
(3)
A 		0.5
(1)
A 		0.5
(1)
A 		0.6
(3)
A 		0.6
(3)
A 		0
B 0.3
(-3)
A 		0.5
(-2.5)
A 		2
(1.1)
A 		2.8
(3)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		3
C 4.4
(3)
A 		1.2
(-1.7)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		2.8
(0.7)
A 		4
avr 1.7
(3) 		0.8
(-1.2) 		1
(-0.2) 		1.2
(0.7) 		0.4
(-3) 		1.2
(0.7) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.734
Sequence Type Exemplar sequence
Representative Public ID K05C4.3 NCBI
Target Description K05C4.3 /REP_DB=WormBase Gene ID /WP=CE21021 /TR=Q9XUU1 /GB=CAB04577.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061167 NCBI Caenorhabditis elegans K05C4.3 (K05C4.3) mRNA, complete cds. 11/11 None
GENEFINDER00000018548 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14756588:14761260:-1 11/11 None
K05C4.3 ENSEMBL cdna:known chromosome:CEL140:I:14756588:14761256:-1 gene:K05C4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018541 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14756518-14761187(-) 95.22 100.0
Public Domain and Genome References
Gene Title
Ensembl K05C4.3
Entrez Gene 187018 Entrez gene
SwissProt Q9XUU1 EMBL-EBI
WormBase CE21021 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04577 Hypothetical protein K05C4.3 [Caenorhabditis elegans] ref|NP_493568.1| K05C4.3 [Caenorhabditis elegans] 0.0
blast CAB04575 Hypothetical protein K05C4.9 [Caenorhabditis elegans] ref|NP_493562.1| K05C4.9 [Caenorhabditis elegans] 5.0E-40
blast AAB37797 Hypothetical protein C50F2.1 [Caenorhabditis elegans] ref|NP_491255.2| C50F2.1 [Caenorhabditis elegans] 1.0E-20
Sequence
Target Sequence 
>C. ELEGANS:177388_AT
gagtaatccagaaacatgccttcatgtcattgaaaacggaggagccaaagagttgttcaa
gtttttattgggatttgacaatgaaactattcaacttggaattcttcgcattttgagaag
tctagtgagtattccaaatgcaaattttgacaagtttataaatgtagatgttcagtactt
aaaacaaatattcaacaaatggaatacagacagactatatattctttattcaattcttgc
gatccttctgaattactctgatcaagttgatcaaagtttttggaaatctgttaatgaact
gttagaaaacaattatcatcggctgaaaacaagtgaaaatgttgatatcgatttgagatt
tcttcagcgcgtgatggcaacaacacaatttgatggaacaaccctttgggttatttatac
aacaaaaaagatgatggaacaaaataaatactatagaaaacgagtaaaggaatcgaatat
atttaacttgatgaagaatgtcagagtgaagaaggatctggcgaaagttgaacattcata
cttattcattactcgaataaacgaatttcgtagtgagacgttttatggcggttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTAATCCAGAAACATGCCTTCAT 673 399 996 Antisense
CATGCCTTCATGTCATTGAAAACGG 336 211 1010 Antisense
TCAACTTGGAATTCTTCGCATTTTG 128 629 1086 Antisense
AAGTCTAGTGAGTATTCCAAATGCA 525 157 1113 Antisense
TATTCAATTCTTGCGATCCTTCTGA 508 661 1222 Antisense
TTGCGATCCTTCTGAATTACTCTGA 114 701 1232 Antisense
ATCGATTTGAGATTTCTTCAGCGCG 172 37 1342 Antisense
TTCTTCAGCGCGTGATGGCAACAAC 188 691 1355 Antisense
GAAGGATCTGGCGAAAGTTGAACAT 514 333 1506 Antisense
ACATTCATACTTATTCATTACTCGA 573 103 1527 Antisense
GTGAGACGTTTTATGGCGGTTCAAA 54 479 1568 Antisense
Sequence Source Affymetrix Proprietary Database