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[177386_s_at]

Description M117.4 /REP_DB=WormBase Gene ID /WP=CE18085 /TR=Q21536 /GB=CAA98136.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 36.8
(-0.7)
A 		74
(3)
A 		13.8
(-3)
A 		15.1
(-2.9)
A 		60
B 66
(-1.6)
A 		55.5
(-3)
A 		84.1
(0.7)
A 		101.6
(3)
A 		46
C 25.2
(-3)
A 		56.7
(3)
A 		48.2
(1.4)
A 		56.8
(3)
A 		32
avr 42.7
(-3) 		62.1
(3) 		48.7
(-1.1) 		57.8
(1.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 50.9
(2.3)
A 		9.3
(-2.4)
A 		4.4
(-3)
A 		38.8
(0.9)
A 		52.1
(2.5)
A 		56.7
(3)
A 		52
B 42.9
(-0.5)
A 		38.8
(-0.8)
A 		7.8
(-3)
A 		21.3
(-2)
A 		38.3
(-0.8)
A 		90.8
(3)
A 		83
C 32.1
(-1.5)
A 		14.9
(-3)
A 		60.6
(1)
A 		46.3
(-0.3)
A 		83.6
(3)
A 		65.2
(1.4)
A 		69
avr 42
(-0.5) 		21
(-3) 		24.3
(-2.6) 		35.5
(-1.3) 		58
(1.4) 		70.9
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.4
(1.8)
A 		16.1
(3)
A 		3.6
(-2.4)
A 		2.2
(-3)
A 		14
B 21.1
(2.6)
A 		13.7
(-3)
A 		19.5
(1.4)
A 		21.6
(3)
A 		8
C 8.3
(-3)
A 		16.3
(2.6)
A 		16.8
(3)
A 		9.6
(-2.1)
A 		9
avr 14.3
(1.5) 		15.4
(3) 		13.3
(0.1) 		11.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 9.4
(0.4)
A 		3.3
(-2.1)
A 		1
(-3)
A 		9.8
(0.6)
A 		15.7
(3)
A 		13.8
(2.2)
A 		15
B 14.9
(-0.6)
A 		12.9
(-0.9)
A 		1.9
(-3)
A 		5.6
(-2.3)
A 		15.6
(-0.4)
A 		33.9
(3)
A 		32
C 11.9
(-1)
A 		4.5
(-3)
A 		15.4
(-0.1)
A 		9.3
(-1.7)
A 		27.1
(3)
A 		21.8
(1.6)
A 		23
avr 12.1
(-0.9) 		6.9
(-2.7) 		6.1
(-3) 		8.2
(-2.3) 		19.5
(1.7) 		23.2
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177386_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9473
Sequence Type Exemplar sequence
Representative Public ID M117.4 NCBI
Target Description M117.4 /REP_DB=WormBase Gene ID /WP=CE18085 /TR=Q21536 /GB=CAA98136.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069837 NCBI Caenorhabditis elegans M117.4 (M117.4) mRNA, complete cds. 11/11 None
SNAP00000015388 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11830811:11833438:-1 10/11 None
GENEFINDER00000015391 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11830792:11833438:-1 11/11 None
M117.4 ENSEMBL cdna:known chromosome:CEL140:IV:11830769:11833515:-1 gene:M117.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11830797-11833444(-) 95.32 100.0
Public Domain and Genome References
Gene Title
Ensembl M117.4
Entrez Gene 178114 Entrez gene
SwissProt Q21536 EMBL-EBI
WormBase CE18085 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98136 Hypothetical protein M117.4 [Caenorhabditis elegans] ref|NP_502238.1| M117.4 [Caenorhabditis elegans] 0.0
blast NP_490963 Y39G10AR.15 [Caenorhabditis elegans] gb|AAK39604.1| Hypothetical protein Y39G10AR.15 [Caenorhabditis elegans] 0.0
blast CAE60289 Hypothetical protein CBG03873 [Caenorhabditis briggsae] 8.0E-76
Sequence
Target Sequence 
>C. ELEGANS:177386_S_AT
cgcccgttttggctaacacgtgacggcaccgagcagataccgaaagttcgaatccagctg
caccgcccgttgaaacaaatgcacagcggaaacccggcgtcgattcagctaaaacttcag
cgaaccgatccgtttttggatccaaaggaggacacgttggagcgattgaaaatagttgat
aaggcgatcggagtggatccgctggatttaacaaaggatcgggaactgaagagagtttgt
gcgaacacttttcatgggacgctgatgtttgaagttgataagcgtcaatacgatacacag
cagaagaaggcagaagcagaagcattgaagctggacccaaagcggaagaatgatggaaag
gaaaaggatcagaaatcgtcgtttgaagacccgaaaaaagtagcgtttaatgtttccgac
aagtgtaccttgcacgtatattttcgaaaacaccgcccactgacaaatcaagggaaaagc
gaacgtttcacggagaagaaatatacgatgggcgagaggaagattatgaagaaaggggaa
aagcctgcggtgccacaattggtaccacctacgtcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCGTTTTGGCTAACACGTGACG 236 255 1372 Antisense
GTGACGGCACCGAGCAGATACCGAA 692 473 1391 Antisense
CGAAAGTTCGAATCCAGCTGCACCG 269 251 1412 Antisense
CCGGCGTCGATTCAGCTAAAACTTC 609 265 1465 Antisense
GAGAGTTTGTGCGAACACTTTTCAT 630 395 1602 Antisense
TAATGTTTCCGACAAGTGTACCTTG 263 627 1779 Antisense
GTGTACCTTGCACGTATATTTTCGA 144 487 1794 Antisense
ACACCGCCCACTGACAAATCAAGGG 469 107 1821 Antisense
GAAAGGGGAAAAGCCTGCGGTGCCA 157 351 1902 Antisense
CCTGCGGTGCCACAATTGGTACCAC 25 263 1915 Antisense
ACAATTGGTACCACCTACGTCATCA 554 113 1926 Antisense
Sequence Source Affymetrix Proprietary Database