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[177385_at]

Description DC2.4 /REP_DB=WormBase Gene ID /WP=CE20633 /TR=Q9UAW0 /GB=AAD14725.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 175.7
(3)
M 		62.1
(-3)
A 		91.4
(-1.5)
A 		138.4
(1)
P 		114
B 93.7
(-0.3)
P 		148.7
(3)
A 		48.8
(-3)
A 		67.5
(-1.9)
P 		100
C 129.7
(-0.5)
P 		108.9
(-1.5)
A 		76.5
(-3)
A 		206.4
(3)
P 		130
avr 133
(2.6) 		106.6
(0.2) 		72.2
(-3) 		137.4
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 67.7
(1.4)
A 		55.6
(-0)
A 		72.9
(1.9)
A 		29
(-3)
A 		82.3
(3)
A 		80.4
(2.8)
M 		53
B 51.6
(-1.6)
A 		99.5
(1.7)
P 		68.3
(-0.4)
A 		63.1
(-0.8)
A 		31.5
(-3)
A 		117.8
(3)
A 		86
C 73.5
(0.7)
P 		103.5
(2.6)
P 		43.2
(-1.2)
A 		84
(1.4)
A 		14.4
(-3)
A 		110.1
(3)
A 		96
avr 64.3
(-0.8) 		86.2
(1.3) 		61.5
(-1.1) 		58.7
(-1.4) 		42.7
(-3) 		102.8
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 64
(3)
M 		13.5
(-3)
A 		23.9
(-1.8)
A 		20.3
(-2.2)
P 		51
B 29.9
(1.4)
P 		36.7
(3)
A 		11.3
(-3)
A 		14.4
(-2.3)
P 		25
C 42.9
(3)
P 		31.3
(-1.3)
A 		26.6
(-3)
A 		34.8
(0)
P 		16
avr 45.6
(3) 		27.2
(-1.4) 		20.6
(-3) 		23.2
(-2.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 12.5
(-1.2)
A 		19.8
(1.3)
A 		15.9
(-0.1)
A 		7.4
(-3)
A 		24.8
(3)
A 		19.6
(1.2)
M 		17
B 17.9
(-2)
A 		33.1
(0.9)
P 		16.6
(-2.3)
A 		16.7
(-2.2)
A 		12.8
(-3)
A 		43.9
(3)
A 		31
C 27.3
(1.2)
P 		31.6
(2)
P 		11
(-1.8)
A 		16.9
(-0.7)
A 		4.7
(-3)
A 		36.8
(3)
A 		32
avr 19.2
(-1.3) 		28.2
(1.4) 		14.5
(-2.8) 		13.7
(-3) 		14.1
(-2.9) 		33.4
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15166
Sequence Type Exemplar sequence
Representative Public ID DC2.4 NCBI
Target Description DC2.4 /REP_DB=WormBase Gene ID /WP=CE20633 /TR=Q9UAW0 /GB=AAD14725.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070752 NCBI Caenorhabditis elegans DC2.4 (DC2.4) mRNA, complete cds. 11/11 None
DC2.4 ENSEMBL cdna:known chromosome:CEL140:V:199228:200515:1 gene:DC2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026548 2/11 Cross Hyb Matching Probes None
GENEFINDER00000026556 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:199227-200546(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl DC2.4
Entrez Gene 183969 Entrez gene
SwissProt Q9UAW0 EMBL-EBI
WormBase CE35266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503153 DC2.4 [Caenorhabditis elegans] gb|AAD14725.2| Hypothetical protein DC2.4 [Caenorhabditis elegans] 7.0E-48
blast CAE62354 Hypothetical protein CBG06432 [Caenorhabditis briggsae] 4.0E-14
Sequence
Target Sequence 
>C. ELEGANS:177385_AT
gaagagcggacttacgagttgcgagagatctttgcacagtgtaaagctgatctttcggct
cttgagaagcggtataggcagcagaatgaggcgaagccaactattggaaaagtcgattta
tttttgaaaaagtttttttttcagcgtttgtattttataaaatcgatatttttgagctat
ttttttaaatttttttgcacatttatcggaaatgattttttgaaggaaaagctgaattcg
ccgcaaaaactgcctcctccgcagcagcagctcaagcttcttcatcgacttgctcaactc
caagaccgtgaccaaaaccagtggaatttcttaatgattctctctacttattcaacaaaa
caaaaaatctcaattaaaattgcatttccaatcaacatatgccttccacacccacgcatt
ttctcgatactcttcaccagtcccgcggatagaaatttctgttcattttttgtttgtcta
ggatctctctgttattactgtgaatcaactatgtgtgtgctttttttctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGCGGACTTACGAGTTGCGAG 595 337 175 Antisense
AAAGCTGATCTTTCGGCTCTTGAGA 161 125 217 Antisense
TGAATTCGCCGCAAAAACTGCCTCC 567 575 407 Antisense
CTCAAGCTTCTTCATCGACTTGCTC 560 227 445 Antisense
CATCGACTTGCTCAACTCCAAGACC 705 211 457 Antisense
ACTCCAAGACCGTGACCAAAACCAG 42 87 471 Antisense
GATTCTCTCTACTTATTCAACAAAA 633 431 510 Antisense
TCCAATCAACATATGCCTTCCACAC 128 587 561 Antisense
TCTTCACCAGTCCCGCGGATAGAAA 649 615 605 Antisense
GTCTAGGATCTCTCTGTTATTACTG 170 469 650 Antisense
AACTATGTGTGTGCTTTTTTTCTCC 525 139 681 Antisense
Sequence Source Affymetrix Proprietary Database