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[177384_s_at]

Description R166.2 /REP_DB=WormBase Gene ID /WP=CE03581 /TR=Q22003 /GB=CAA90663.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 26      4grp_high_8_8 > 58      6grp_highest_nonorm > 75      6grp_total > 57      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 1095.3
(3)
P 		855.5
(-1.3)
P 		979.1
(0.9)
P 		758.3
(-3)
P 		337
B 998.6
(0.4)
P 		911.2
(-1.4)
P 		1125
(3)
P 		834.5
(-3)
P 		291
C 916.4
(0.7)
P 		861.6
(-0.1)
P 		1075.8
(3)
P 		657.4
(-3)
P 		418
avr 1003.4
(1.9) 		876.1
(-0.6) 		1060
(3) 		750.1
(-3) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 895.7
(0.1)
P 		904.6
(0.2)
P 		694.2
(-3)
P 		856.5
(-0.5)
P 		891.2
(0)
P 		1086.4
(3)
P 		392
B 1014.2
(3)
P 		822.9
(-2.1)
P 		898.3
(-0.1)
P 		896.8
(-0.1)
P 		788.3
(-3)
P 		974.7
(2)
P 		226
C 708.8
(-3)
P 		851.3
(-0.3)
P 		882.2
(0.3)
P 		894.9
(0.6)
P 		727.9
(-2.6)
P 		1023.2
(3)
P 		314
avr 872.9
(-1.1) 		859.6
(-1.5) 		824.9
(-2.4) 		882.7
(-0.9) 		802.5
(-3) 		1028.1
(3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 398.8
(3)
P 		185.7
(-1.4)
P 		255.9
(0)
P 		111
(-3)
P 		288
B 318.4
(3)
P 		225
(-1)
P 		260.7
(0.5)
P 		177.8
(-3)
P 		141
C 303.3
(1.4)
P 		247.7
(0.1)
P 		375
(3)
P 		110.8
(-3)
P 		264
avr 340.2
(3) 		219.5
(-0.5) 		297.2
(1.8) 		133.2
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 165.1
(-2.5)
P 		321.7
(3)
P 		151.2
(-3)
P 		217.2
(-0.7)
P 		268.9
(1.1)
P 		264.5
(1)
P 		171
B 352.9
(2.6)
P 		273.9
(-0.7)
P 		218.1
(-3)
P 		237.5
(-2.2)
P 		320.3
(1.2)
P 		363.5
(3)
P 		145
C 262.7
(0.1)
P 		259.8
(-0.1)
P 		224.5
(-1.4)
P 		180
(-3)
P 		235.5
(-1)
P 		342.5
(3)
P 		163
avr 260.2
(-0) 		285.1
(1.2) 		197.9
(-3) 		211.6
(-2.3) 		274.9
(0.7) 		323.5
(3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177384_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4020
Sequence Type Exemplar sequence
Representative Public ID R166.2 NCBI
Target Description R166.2 /REP_DB=WormBase Gene ID /WP=CE03581 /TR=Q22003 /GB=CAA90663.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063868 NCBI Caenorhabditis elegans R166.2 (R166.2) mRNA, complete cds. 11/11 None
SNAP00000017512 ENSEMBL cdna:SNAP chromosome:CEL140:II:10534449:10537580:-1 11/11 None
GENEFINDER00000017520 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10534449:10537580:-1 11/11 None
R166.2.1 ENSEMBL cdna:known chromosome:CEL140:II:10533870:10537581:-1 gene:R166.2 11/11 None
R166.2.2 ENSEMBL cdna:known chromosome:CEL140:II:10533870:10537582:-1 gene:R166.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10534445-10537577(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R166.2
Entrez Gene 174620 Entrez gene
SwissProt Q22003 EMBL-EBI
WormBase CE03581 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250522_AT transmembrane CLPTM1 family protein at
Protein Similarities
Method ID Description E-Value
blast CAA90663 Hypothetical protein R166.2 [Caenorhabditis elegans] ref|NP_496269.1| R166.2 [Caenorhabditis elegans] 0.0
blast CAE59659 Hypothetical protein CBG03077 [Caenorhabditis briggsae] 0.0
blast CAE65840 Hypothetical protein CBG10971 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008429 EMBL-EBI Cleft lip and palate transmembrane 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496269.1 5 328-350,363-385,453-472,477-499,514-536
R166.2.1 5 328-350,363-385,453-472,477-499,514-536
R166.2.2 5 328-350,363-385,453-472,477-499,514-536
SNAP00000017512 5 328-350,363-385,453-472,477-499,514-536
GENEFINDER00000017520 5 328-350,363-385,453-472,477-499,514-536
Sequence
Target Sequence 
>C. ELEGANS:177384_S_AT
caaatacctcggatgggcacttttcccacttcttgtcggatatgccatctattctgtaat
ctacgttgagcaaaaaggatggtactcctgggtactcaatatgctctatggattcttgct
cacgttcggattcattaccatgacacctcagctgttcattaactacaagctcaaatcagt
ggctcatctgccgtggcgtatgctcacttacaaattcatcaatacgtttattgatgattt
gttcgcgtttgtgatccggatgccgttgctctacagaattggttgcttcagagatgatat
cattttcctgatctacctctaccaacgctgggcgtatcgcattgatccaactcgactgaa
cgagttcggcacaagcctcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATACCTCGGATGGGCACTTTTC 326 191 1365 Antisense
TTTCCCACTTCTTGTCGGATATGCC 33 671 1386 Antisense
ACTCCTGGGTACTCAATATGCTCTA 453 97 1448 Antisense
ATTCTTGCTCACGTTCGGATTCATT 555 11 1476 Antisense
TACCATGACACCTCAGCTGTTCATT 125 651 1500 Antisense
CAAATCAGTGGCTCATCTGCCGTGG 617 193 1536 Antisense
CGGATGCCGTTGCTCTACAGAATTG 524 243 1621 Antisense
TATCATTTTCCTGATCTACCTCTAC 364 659 1662 Antisense
AACGCTGGGCGTATCGCATTGATCC 534 145 1688 Antisense
GCATTGATCCAACTCGACTGAACGA 529 307 1703 Antisense
GAACGAGTTCGGCACAAGCCTCGAG 455 331 1722 Antisense
Sequence Source Affymetrix Proprietary Database