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[177382_at]

Description AH10.2 /REP_DB=WormBase Gene ID /WP=CE07656 /TR=O02202 /GB=CAB03276.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 56      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 5.2
(-2.8)
A 		4.4
(-3)
A 		34.4
(3)
A 		7.7
(-2.3)
A 		30
B 35
(2.6)
A 		21.1
(0)
A 		37.1
(3)
A 		4.7
(-3)
A 		32
C 26.7
(-2.9)
A 		36.7
(3)
A 		29.1
(-1.5)
A 		26.6
(-3)
A 		10
avr 22.3
(-0.3) 		20.7
(-0.7) 		33.5
(3) 		13
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 28.7
(0.6)
A 		7.6
(-2.9)
A 		18
(-1.2)
A 		37
(2)
A 		7.2
(-3)
A 		42.7
(3)
A 		36
B 40.2
(1)
A 		50.4
(3)
A 		46.3
(2.2)
A 		40
(1)
A 		28.4
(-1.3)
A 		19.9
(-3)
A 		31
C 41.1
(0.3)
A 		67.6
(3)
A 		33.9
(-0.4)
A 		11.1
(-2.7)
A 		7.7
(-3)
A 		10.9
(-2.7)
A 		60
avr 36.7
(1.9) 		41.9
(3) 		32.7
(1) 		29.4
(0.3) 		14.4
(-3) 		24.5
(-0.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.9
(-2.3)
A 		1
(-3)
A 		9
(3)
A 		1.1
(-2.9)
A 		8
B 11.2
(3)
A 		5.2
(-0.5)
A 		8.6
(1.5)
A 		1
(-3)
A 		10
C 8.8
(1.2)
A 		10.6
(3)
A 		10.2
(2.6)
A 		4.5
(-3)
A 		6
avr 7.3
(1.3) 		5.6
(-0.1) 		9.3
(3) 		2.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.3
(-0.7)
A 		2.7
(-2.6)
A 		3.9
(-1.8)
A 		9.4
(2.3)
A 		2.2
(-3)
A 		10.4
(3)
A 		8
B 14
(1.2)
A 		16.8
(3)
A 		11.2
(-0.6)
A 		10.6
(-1)
A 		11.5
(-0.4)
A 		7.4
(-3)
A 		9
C 15.2
(1.2)
A 		20.6
(3)
A 		8.6
(-0.9)
A 		2.2
(-3)
A 		2.5
(-2.9)
A 		3.7
(-2.5)
A 		18
avr 11.5
(1.6) 		13.4
(3) 		7.9
(-1.1) 		7.4
(-1.5) 		5.4
(-3) 		7.2
(-1.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177382_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13330
Sequence Type Exemplar sequence
Representative Public ID AH10.2 NCBI
Target Description AH10.2 /REP_DB=WormBase Gene ID /WP=CE07656 /TR=O02202 /GB=CAB03276.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074102 NCBI Caenorhabditis elegans AH10.2 (AH10.2) mRNA, complete cds. 11/11 None
AH10.2 ENSEMBL cdna:known chromosome:CEL140:V:14159419:14160210:1 gene:AH10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018953 4/11 Cross Hyb Matching Probes None
SNAP00000021617 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14159418-14160210(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl AH10.2
Entrez Gene 181812 Entrez gene
SwissProt O02202 EMBL-EBI
WormBase CE07656 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03276 Hypothetical protein AH10.2 [Caenorhabditis elegans] emb|CAB02689.1| Hypothetical protein AH10.2 [Caenorhabditis elegans] ref|NP_506503.1| AH10.2 [Caenorhabditis elegans] 1.0E-109
blast CAA21758 Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] emb|CAB03271.1| Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] ref|NP_506725.1| Y75B12A.2 [Caenorhabditis elegans] 2.0E-41
blast CAE63974 Hypothetical protein CBG08565 [Caenorhabditis briggsae] 2.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506503.1 2 7-24,171-193
AH10.2 2 7-24,171-193
Sequence
Target Sequence 
>C. ELEGANS:177382_AT
aatccaagaacactgagcttccacccaaaagaccatcaagaaacgcttgagatctcattt
tccaataatgttagcgatctgacaacagtggaatatcatatgaatagtaatgaactcaat
acttatcaaactattctattctctgacgccgttttattggttcagtcagttttcaagtgt
gataccgggttcgttggagataaatgccaagatattattacttctacctctaccacagtg
atttccacaactacaacagaaatcaaaacttcaactactaaggtaattatagtaatcaat
gatgttccaaaagaagcttcggccctgcaacaatccatctctttaaacgtcattcattgc
tccgtgctcatcgtgatcatcatagtacttctcattcttatcattatcgtctacatcttc
ctccgtccacatcatcaaaaacacgtttacattcaaccggaatctccagcccaaaatgag
agaaaatgctctgttctccttgaagaatcaggttatttttcgccactaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCAAGAACACTGAGCTTCCACC 561 167 169 Antisense
CAAACTATTCTATTCTCTGACGCCG 675 191 295 Antisense
GACGCCGTTTTATTGGTTCAGTCAG 523 381 313 Antisense
AGATATTATTACTTCTACCTCTACC 65 67 378 Antisense
TACCTCTACCACAGTGATTTCCACA 505 649 393 Antisense
GCAACAATCCATCTCTTTAAACGTC 400 319 495 Antisense
TAAACGTCATTCATTGCTCCGTGCT 389 641 512 Antisense
AGTACTTCTCATTCTTATCATTATC 26 63 552 Antisense
TTACATTCAACCGGAATCTCCAGCC 515 681 615 Antisense
AATGCTCTGTTCTCCTTGAAGAATC 694 165 653 Antisense
AATCAGGTTATTTTTCGCCACTAGA 30 169 674 Antisense
Sequence Source Affymetrix Proprietary Database