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[177381_at]

Description Y59H11AL.A /REP_DB=WormBase Gene ID /WP=CE26552 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59619.1
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_high_8_8 > 24      6grp_highest_nonorm > 90      6grp_total > 26      4grp_total > 39      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 398.3
(3)
P 		73.1
(-2.7)
A 		58.9
(-3)
A 		161.4
(-1.2)
P 		339
B 361.9
(3)
P 		104.3
(-2.5)
M 		82.9
(-3)
A 		144.5
(-1.7)
P 		279
C 392.6
(3)
P 		98.4
(-2.8)
P 		90.1
(-3)
P 		150.1
(-1.8)
P 		303
avr 384.3
(3) 		91.9
(-2.7) 		77.3
(-3) 		152
(-1.5) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 231.3
(3)
P 		206.5
(1.9)
P 		109.9
(-2.4)
P 		95.4
(-3)
P 		161.8
(-0.1)
P 		146.5
(-0.7)
P 		136
B 205
(1.8)
P 		226.1
(3)
P 		129
(-2.4)
P 		141.4
(-1.7)
P 		118.3
(-3)
P 		161.7
(-0.6)
P 		108
C 188.1
(0.5)
P 		245.5
(3)
P 		129.3
(-2)
P 		124.5
(-2.2)
P 		105.5
(-3)
P 		126.4
(-2.1)
P 		140
avr 208.1
(2) 		226
(3) 		122.7
(-2.9) 		120.4
(-3) 		128.5
(-2.5) 		144.9
(-1.6) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 145
(3)
P 		15.9
(-3)
A 		15.4
(-3)
A 		23.6
(-2.6)
P 		130
B 115.4
(3)
P 		25.8
(-2.6)
M 		19.2
(-3)
A 		30.8
(-2.3)
P 		96
C 130
(3)
P 		28.3
(-2.8)
P 		31.4
(-2.7)
P 		25.3
(-3)
P 		105
avr 130.1
(3) 		23.3
(-2.9) 		22
(-3) 		26.6
(-2.7) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 42.6
(-0.7)
P 		73.4
(3)
P 		23.9
(-3)
P 		24.2
(-3)
P 		48.8
(0)
P 		35.7
(-1.6)
P 		50
B 71.3
(2.5)
P 		75.3
(3)
P 		31.3
(-3)
P 		37.4
(-2.2)
P 		48.1
(-0.7)
P 		60.3
(1)
P 		44
C 69.7
(2.4)
P 		74.9
(3)
P 		32.9
(-2.1)
P 		25
(-3)
P 		34.1
(-1.9)
P 		42.3
(-0.9)
P 		50
avr 61.2
(1.3) 		74.5
(3) 		29.4
(-2.9) 		28.9
(-3) 		43.7
(-1.1) 		46.1
(-0.7) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19116
Sequence Type Exemplar sequence
Representative Public ID Y59H11AL.A NCBI
Target Description Y59H11AL.A /REP_DB=WormBase Gene ID /WP=CE26552 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59619.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028369(10), NM_001028370(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028369 NCBI Caenorhabditis elegans Y59H11AL.1a (Y59H11AL.1) mRNA, complete cds. 10/11 None
NM_001028370 NCBI Caenorhabditis elegans Y59H11AL.1b (Y59H11AL.1) mRNA, complete cds. 10/11 None
Y59H11AL.1 ENSEMBL cdna:known chromosome:CEL140:IV:8559416:8563125:1 gene:Y59H11AL.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037157 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8559455-8562786(+) 93.8 100.0
Public Domain and Genome References
Ensembl Y59H11AL.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59619 Hypothetical protein Y59H11AL.1a [Caenorhabditis elegans] ref|NP_001023540.1| Y59H11AL.1a [Caenorhabditis elegans] 0.0
blast AAX55682 Hypothetical protein Y59H11AL.1b [Caenorhabditis elegans] ref|NP_001023541.1| Y59H11AL.1b [Caenorhabditis elegans] 0.0
blast CAE69450 Hypothetical protein CBG15641 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.3E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023540.1 7 55-77,90-112,127-149,170-192,225-247,279-301,316-338
NP_001023541.1 7 55-77,90-112,127-149,170-192,225-247,279-301,316-338
Y59H11AL.1 7 55-77,90-112,127-149,170-192,225-247,279-301,316-338
Sequence
Target Sequence 
>C. ELEGANS:177381_AT
agctggtcccaatggtgattctcatttcggcactcttcgcactttgttggcttcctttac
ttatactgatcaacgtcattccagaattctatccagatatcaacagttggggatatattc
tgtatttgtggtggtttgctcatggacttgccatgtctcattcaatggtcaacccaatta
tctatttcattcgaaatgcccgtttccgtgaaggattctgtttcttctcttcaaaacttc
ttccatgtatatcatttaaagaacttcgtcttttaactgataatactagcagaagatata
atgatatattcaaaataaaccgatatataacgttacaaagtaaagttgtccggtgcatta
ctaagagaggaaatacgacatcgcttacgagatattcacgaagtggagtccttgacaggc
aaacatgtcgttcggcacgtttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGGTCCCAATGGTGATTCTCAT 385 81 836 Antisense
GTTGGCTTCCTTTACTTATACTGAT 663 425 881 Antisense
TGGTGGTTTGCTCATGGACTTGCCA 90 553 964 Antisense
GGACTTGCCATGTCTCATTCAATGG 221 525 979 Antisense
GGTCAACCCAATTATCTATTTCATT 617 503 1002 Antisense
TCATTCGAAATGCCCGTTTCCGTGA 285 617 1022 Antisense
GAAGGATTCTGTTTCTTCTCTTCAA 168 335 1045 Antisense
TTCTCTTCAAAACTTCTTCCATGTA 680 691 1060 Antisense
GTTGTCCGGTGCATTACTAAGAGAG 85 437 1180 Antisense
GAAGTGGAGTCCTTGACAGGCAAAC 637 335 1235 Antisense
AAACATGTCGTTCGGCACGTTTCTT 33 129 1256 Antisense
Sequence Source Affymetrix Proprietary Database