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[177380_at]

Description M162.1 /REP_DB=WormBase Gene ID /WP=CE18891 /TR=Q9XUD0 /GB=CAB05253.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 12.2
(3)
A 		11.1
(2.3)
A 		2.2
(-3)
A 		3.3
(-2.3)
A 		10
B 5.2
(-3)
A 		6.5
(-1.6)
A 		10.8
(3)
A 		8.1
(0.1)
A 		6
C 1.8
(-3)
A 		5.8
(0.2)
A 		2
(-2.8)
A 		9.2
(3)
A 		7
avr 6.4
(0) 		7.8
(3) 		5
(-3) 		6.9
(1.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 34.2
(3)
A 		2.1
(-2.9)
A 		6.8
(-2)
A 		12.4
(-1)
A 		9.2
(-1.6)
A 		1.6
(-3)
A 		33
B 5.8
(-2.4)
A 		38.3
(2)
A 		13.9
(-1.3)
A 		45.6
(3)
A 		1.8
(-3)
A 		1.7
(-3)
A 		44
C 16.6
(2.2)
A 		18.8
(3)
A 		3.8
(-2.4)
A 		6.7
(-1.3)
A 		2.1
(-3)
A 		16.6
(2.2)
A 		17
avr 18.9
(2.1) 		19.7
(2.3) 		8.2
(-1.7) 		21.6
(3) 		4.4
(-3) 		6.6
(-2.2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.4
(3)
A 		2.4
(-0.1)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		4
B 1.7
(-2.3)
A 		1.6
(-3)
A 		2.5
(3)
A 		1.7
(-2.3)
A 		1
C 0.6
(-3)
A 		1.7
(3)
A 		0.7
(-2.5)
A 		1.6
(2.5)
A 		1
avr 2.2
(3) 		1.9
(1) 		1.3
(-3) 		1.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.3
(3)
A 		0.8
(-2.6)
A 		1.5
(-1.9)
A 		3.2
(-0.2)
A 		2.8
(-0.6)
A 		0.4
(-3)
A 		6
B 2
(-2.3)
A 		12.8
(3)
A 		3.4
(-1.6)
A 		12.1
(2.7)
A 		0.7
(-3)
A 		0.6
(-3)
A 		12
C 6.2
(3)
A 		5.7
(2.5)
A 		1
(-2.7)
A 		1.3
(-2.3)
A 		0.7
(-3)
A 		5.5
(2.2)
A 		6
avr 4.8
(1.1) 		6.4
(3) 		2
(-2.3) 		5.5
(1.9) 		1.4
(-3) 		2.2
(-2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13152
Sequence Type Exemplar sequence
Representative Public ID M162.1 NCBI
Target Description M162.1 /REP_DB=WormBase Gene ID /WP=CE18891 /TR=Q9XUD0 /GB=CAB05253.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075436 NCBI Caenorhabditis elegans M162.1 (M162.1) mRNA, complete cds. 11/11 None
M162.1 ENSEMBL cdna:known chromosome:CEL140:V:19788041:19788972:1 gene:M162.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032750 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19788040-19788972(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M162.1
Entrez Gene 187485 Entrez gene
SwissProt Q9XUD0 EMBL-EBI
WormBase CE18891 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05253 Hypothetical protein M162.1 [Caenorhabditis elegans] ref|NP_507837.1| M162.1 [Caenorhabditis elegans] 3.0E-66
blast CAA22323 Hypothetical protein Y18D10A.12 [Caenorhabditis elegans] ref|NP_493250.1| Y18D10A.12 [Caenorhabditis elegans] 2.0E-20
blast CAB63375 Hypothetical protein Y51A2A.7 [Caenorhabditis elegans] ref|NP_507583.1| Y51A2A.7 [Caenorhabditis elegans] 4.0E-20
Sequence
Target Sequence 
>C. ELEGANS:177380_AT
gctttttctcatcgcttttggtatatcctcggtctttgctcattctttttctggatcctc
tgattcggatgaaggtcacagtcatcgtggtcgtggacataggacaccccgaccatctgg
accaaaatcttgtgaaagtggatggacggcctttgatagaccacatgggagatggtgtat
taagccattctacgggaacacgaaccacatcactgcacaagccgcgtgccaaaaacatgg
agccaacctaacaggcttccaaactgctaatgaagttacacaaaccgttcacctattaag
aacccttatcaaccaaaaatctcccggtgcaaataccatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTTTCTCATCGCTTTTGGTATA 165 305 18 Antisense
TTTTGGTATATCCTCGGTCTTTGCT 282 679 33 Antisense
TCTTTGCTCATTCTTTTTCTGGATC 323 615 50 Antisense
GGTCACAGTCATCGTGGTCGTGGAC 270 503 91 Antisense
GGTCGTGGACATAGGACACCCCGAC 404 501 106 Antisense
ACGGCCTTTGATAGACCACATGGGA 43 97 163 Antisense
TCTACGGGAACACGAACCACATCAC 593 613 206 Antisense
TCACTGCACAAGCCGCGTGCCAAAA 576 625 227 Antisense
GGAGCCAACCTAACAGGCTTCCAAA 178 521 256 Antisense
GAAGTTACACAAACCGTTCACCTAT 248 337 289 Antisense
AATCTCCCGGTGCAAATACCATCAC 310 169 335 Antisense
Sequence Source Affymetrix Proprietary Database