[Home] | [Total List]

[177377_at]

Description Y54F10AR.B /REP_DB=WormBase Gene ID /WP=CE25442 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59560.1
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 85      6grp_total > 90      4grp_total > 04      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 604
1 2 3 4 range
A 557.5
(-0.5)
P 		381.5
(-2.9)
P 		377.6
(-3)
P 		816.7
(3)
P 		439
B 443
(-2.3)
P 		376.9
(-3)
P 		437.7
(-2.4)
P 		981
(3)
P 		604
C 488.5
(-2)
P 		409.3
(-3)
P 		443.7
(-2.6)
P 		870.9
(3)
P 		462
avr 496.3
(-1.7) 		389.2
(-3) 		419.7
(-2.6) 		889.5
(3) 		500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 865.5
(3)
P 		661.1
(-1.6)
P 		597.9
(-3)
P 		829.9
(2.2)
P 		828.1
(2.2)
P 		767.2
(0.8)
P 		268
B 916.6
(3)
P 		834.6
(1.2)
P 		687.8
(-2)
P 		763.7
(-0.3)
P 		639.5
(-3)
P 		721.9
(-1.2)
P 		277
C 635.4
(-2.5)
P 		879.4
(3)
P 		614
(-3)
P 		819.3
(1.6)
P 		796.4
(1.1)
P 		821.5
(1.7)
P 		265
avr 805.8
(3) 		791.7
(2.5) 		633.2
(-3) 		804.3
(2.9) 		754.7
(1.2) 		770.2
(1.8) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 203
(3)
P 		82.8
(-3)
P 		98.7
(-2.2)
P 		119.6
(-1.2)
P 		120
B 141.3
(-0.5)
P 		93.1
(-3)
P 		101.4
(-2.6)
P 		209
(3)
P 		116
C 161.7
(3)
P 		117.7
(-3)
P 		154.6
(2)
P 		146.9
(1)
P 		44
avr 168.7
(3) 		97.9
(-3) 		118.2
(-1.3) 		158.5
(2.1) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 159.5
(-1.5)
P 		235.1
(2.3)
P 		130.2
(-3)
P 		210.5
(1)
P 		249.9
(3)
P 		186.8
(-0.2)
P 		120
B 318.9
(3)
P 		277.8
(1.4)
P 		167
(-3)
P 		202.3
(-1.6)
P 		259.8
(0.7)
P 		269.2
(1)
P 		152
C 235.5
(1)
P 		268.3
(2.7)
P 		156.3
(-3)
P 		164.8
(-2.6)
P 		257.7
(2.1)
P 		275
(3)
P 		119
avr 238
(1.8) 		260.4
(3) 		151.2
(-3) 		192.5
(-0.7) 		255.8
(2.7) 		243.7
(2.1) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18927
Sequence Type Exemplar sequence
Representative Public ID Y54F10AR.B NCBI
Target Description Y54F10AR.B /REP_DB=WormBase Gene ID /WP=CE25442 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59560.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065180 NCBI Caenorhabditis elegans Y54F10AR.2 (Y54F10AR.2) mRNA, complete cds. 11/11 None
GENEFINDER00000000508 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2567457:2571536:-1 11/11 None
Y54F10AR.2 ENSEMBL cdna:known chromosome:CEL140:III:2567457:2571297:-1 gene:Y54F10AR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2567456-2570574(-) 96.26 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54F10AR.2
Entrez Gene 175375 Entrez gene
SwissProt Q9N3C2 EMBL-EBI
WormBase CE35107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59560 Hypothetical protein Y54F10AR.2 [Caenorhabditis elegans] ref|NP_497581.2| Y54F10AR.2 [Caenorhabditis elegans] 0.0
blast AAF59560 Hypothetical protein Y54F10AR.2 [Caenorhabditis elegans] ref|NP_497581.2| Y54F10AR.2 [Caenorhabditis elegans] 1.0E-116
blast CAE65007 Hypothetical protein CBG09845 [Caenorhabditis briggsae] 7.0E-13
Sequence
Target Sequence 
>C. ELEGANS:177377_AT
ttcctcgctcactgtgattcggtttttttcgaagttcttcgagctattcgggaggaagac
ttttcaaatttggcggaattcacactcggcggacacgaaacgctgcaatttcatcgctcg
gccgcccataagctcagtaaaattcagaaggaggcgctgaatataacacaagatgacctg
ctcggcgacaacggctatatcgtcaaatttccatatctccgacatgaaatgggtccatat
attcattcgatagagtttacaaacgtcgacgctgtcggaaatacacatttgggtgacggg
gaaaagcctttggataagatattctgcagatacaaagtggtgctcggtggatgctacaaa
ttcgatagtctcctgaatgaaatccgtaaaggatcacaaatgtggtcacaacggatcaaa
acacccaaggactacactttcaaatggccacgctacacgattgtcgaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTCGCTCACTGTGATTCGGTTT 276 699 364 Antisense
AAATTTGGCGGAATTCACACTCGGC 497 115 429 Antisense
ACACTCGGCGGACACGAAACGCTGC 111 109 445 Antisense
GGCCGCCCATAAGCTCAGTAAAATT 444 521 483 Antisense
ATAACACAAGATGACCTGCTCGGCG 464 25 526 Antisense
CTCGGCGACAACGGCTATATCGTCA 181 233 544 Antisense
GTCAAATTTCCATATCTCCGACATG 137 465 565 Antisense
GTTTACAAACGTCGACGCTGTCGGA 679 445 618 Antisense
AAGTGGTGCTCGGTGGATGCTACAA 429 159 698 Antisense
GGACTACACTTTCAAATGGCCACGC 350 523 792 Antisense
GCCACGCTACACGATTGTCGAATTG 548 279 810 Antisense
Sequence Source Affymetrix Proprietary Database