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[177375_at]

Description M60.2 /REP_DB=WormBase Gene ID /WP=CE04775 /TR=Q9GYM9 /GB=AAF99996.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 13      6grp_total > 13      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9618
1 2 3 4 range
A 9235.3
(3)
P 		3891.8
(-0.6)
P 		4138.6
(-0.5)
P 		409.6
(-3)
P 		8826
B 9875.3
(3)
P 		3841.5
(-0.8)
P 		4430.6
(-0.4)
P 		311.4
(-3)
P 		9564
C 9311.9
(3)
P 		3746
(-0.7)
P 		4309.5
(-0.3)
P 		256.9
(-3)
P 		9055
avr 9474.2
(3) 		3826.4
(-0.7) 		4292.9
(-0.4) 		326
(-3) 		9148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3921
1 2 3 4 5 6 range
A 3098.4
(0.4)
P 		4760.3
(3)
P 		2361.1
(-0.8)
P 		3337.7
(0.8)
P 		1730.3
(-1.8)
P 		951.4
(-3)
P 		3809
B 3498.7
(2.7)
P 		3647.6
(3)
P 		2399.8
(0.3)
P 		2507.6
(0.6)
P 		1863
(-0.8)
P 		839.3
(-3)
P 		2808
C 4670.2
(3)
P 		3476.3
(1)
P 		3826.8
(1.6)
P 		2821.1
(-0)
P 		2198.4
(-1.1)
P 		1010.9
(-3)
P 		3659
avr 3755.8
(2.6) 		3961.4
(3) 		2862.6
(0.8) 		2888.8
(0.9) 		1930.6
(-1) 		933.9
(-3) 		3028
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3319
1 2 3 4 range
A 3362.6
(3)
P 		844.8
(-1.6)
P 		1081.9
(-1.1)
P 		60
(-3)
P 		3303
B 3149.2
(3)
P 		948.8
(-1.3)
P 		1026.7
(-1.1)
P 		66.4
(-3)
P 		3083
C 3082.5
(3)
P 		1077
(-1)
P 		1502
(-0.1)
P 		43.3
(-3)
P 		3039
avr 3198.1
(3) 		956.9
(-1.3) 		1203.5
(-0.8) 		56.6
(-3) 		3142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1499
1 2 3 4 5 6 range
A 571.2
(-1.6)
P 		1693
(3)
P 		514.2
(-1.8)
P 		846.5
(-0.5)
P 		522.1
(-1.8)
P 		231.6
(-3)
P 		1461
B 1217.4
(3)
P 		1214.1
(3)
P 		582.8
(-1.2)
P 		664.2
(-0.7)
P 		756.9
(-0.1)
P 		313
(-3)
P 		904
C 1731
(3)
P 		1060.7
(0.1)
P 		974
(-0.3)
P 		567.3
(-2)
P 		711.4
(-1.4)
P 		338.4
(-3)
P 		1393
avr 1173.2
(2.1) 		1322.6
(3) 		690.3
(-0.7) 		692.7
(-0.7) 		663.5
(-0.8) 		294.3
(-3) 		1028
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16083
Sequence Type Exemplar sequence
Representative Public ID M60.2 NCBI
Target Description M60.2 /REP_DB=WormBase Gene ID /WP=CE04775 /TR=Q9GYM9 /GB=AAF99996.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076990 NCBI Caenorhabditis elegans M60.2 (M60.2) mRNA, complete cds. 11/11 A 
SNAP00000012320 ENSEMBL cdna:SNAP chromosome:CEL140:X:8241965:8247749:1 11/11 None
GENEFINDER00000012327 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8242261:8243071:1 11/11 None
M60.2.2 ENSEMBL cdna:known chromosome:CEL140:X:8242237:8247805:1 gene:M60.2 11/11 A 
M60.2.1 ENSEMBL cdna:known chromosome:CEL140:X:8242239:8247805:1 gene:M60.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8242259-8243136(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M60.2
Entrez Gene 181079 Entrez gene
SwissProt Q9GYM9 EMBL-EBI
WormBase CE28630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99995 Hypothetical protein M60.2 [Caenorhabditis elegans] ref|NP_509391.1| M60.2 [Caenorhabditis elegans] 0.0
blast CAE74863 Hypothetical protein CBG22718 [Caenorhabditis briggsae] 0.0
blast AAF99995 Hypothetical protein M60.2 [Caenorhabditis elegans] ref|NP_509391.1| M60.2 [Caenorhabditis elegans] 1.0E-118
blast T28851 hypothetical protein M60.2 - Caenorhabditis elegans 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:177375_AT
aaatgttgatctcgccgctgtaaatacattcctcaccaaccttgcggcttctgatgttcg
aacggactcattggttactttgaactaccagaacatggcatcaaagaagagcccagacca
cgataacgccaaagacccccttttcacaactgtagacaaatctgttttgggaagcaacgc
gtacatcacaattgccaatttgatgccattcttcaactacgacagtgataccgcagtgcc
gacttccgccgactacgctagcgcagtcaaagattttcttgacaacttcattgcctcgga
tgctgtcaaacaagcatggacgttccttcaagctcaaggagtatctactagcgatccaat
tgatttccgtcaacaactctataacttatggttccttccgtatgctagaaaccaagctct
tggaagctgcggattcaagtctgtctttgtcggagaagccactggtactgtcgtgaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTTGATCTCGCCGCTGTAAAT 611 119 81 Antisense
GCTGTAAATACATTCCTCACCAACC 594 295 97 Antisense
AAAGAAGAGCCCAGACCACGATAAC 184 121 183 Antisense
AACGCGTACATCACAATTGCCAATT 76 147 256 Antisense
ATGCCATTCTTCAACTACGACAGTG 472 41 283 Antisense
TTCTTGACAACTTCATTGCCTCGGA 548 689 356 Antisense
CAAGCATGGACGTTCCTTCAAGCTC 466 185 391 Antisense
GATTTCCGTCAACAACTCTATAACT 219 425 442 Antisense
CTTATGGTTCCTTCCGTATGCTAGA 40 223 465 Antisense
GAAGCTGCGGATTCAAGTCTGTCTT 440 343 503 Antisense
GAAGCCACTGGTACTGTCGTGAACC 518 345 535 Antisense
Sequence Source Affymetrix Proprietary Database