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[177374_at]

Description LLC1.2 /REP_DB=WormBase Gene ID /WP=CE16261 /TR=O17954 /GB=CAB05250.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 25      6grp_total > 40      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4847
1 2 3 4 range
A 5100.3
(1.7)
P 		5676.4
(2.4)
P 		6156.3
(3)
P 		1417.3
(-3)
P 		4739
B 5241.6
(2.4)
P 		5606.5
(2.9)
P 		5654.9
(3)
P 		1413.5
(-3)
P 		4241
C 4998.1
(1.8)
P 		5952
(3)
P 		5527.1
(2.5)
P 		1309.8
(-3)
P 		4642
avr 5113.3
(2.1) 		5745
(3) 		5779.4
(3) 		1380.2
(-3) 		4399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3364
1 2 3 4 5 6 range
A 4219.4
(0.4)
P 		4928.5
(2.3)
P 		5217.2
(3)
P 		5007.8
(2.5)
P 		3143.5
(-2.3)
P 		2890.7
(-3)
P 		2327
B 3938.1
(1.3)
P 		4318.4
(2.8)
P 		4309
(2.8)
P 		4367.9
(3)
P 		3301.9
(-1.2)
P 		2843.3
(-3)
P 		1525
C 4161.2
(-0.1)
P 		4208.8
(-0)
P 		5892.7
(3)
P 		5264.7
(1.9)
P 		3680.9
(-0.9)
P 		2528.4
(-3)
P 		3364
avr 4106.2
(0.4) 		4485.2
(1.4) 		5139.6
(3) 		4880.1
(2.3) 		3375.4
(-1.4) 		2754.1
(-3) 		2386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1719
1 2 3 4 range
A 1857
(3)
P 		1232.2
(0.7)
P 		1609.4
(2.1)
P 		207.5
(-3)
P 		1650
B 1671.5
(3)
P 		1384.7
(1.7)
P 		1310.4
(1.4)
P 		301.2
(-3)
P 		1370
C 1654.5
(2)
P 		1711.2
(2.2)
P 		1926.4
(3)
P 		220.9
(-3)
P 		1706
avr 1727.7
(3) 		1442.7
(1.8) 		1615.4
(2.5) 		243.2
(-3) 		1485

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1049
1 2 3 4 5 6 range
A 777.8
(-2.6)
P 		1752.8
(3)
P 		1136.2
(-0.5)
P 		1270.1
(0.2)
P 		948.6
(-1.6)
P 		703.8
(-3)
P 		1049
B 1370.3
(2)
P 		1437.4
(3)
P 		1046.3
(-3)
P 		1156.9
(-1.3)
P 		1341.5
(1.5)
P 		1060.3
(-2.8)
P 		391
C 1542.4
(3)
P 		1284.2
(0.8)
P 		1499.8
(2.6)
P 		1058.7
(-1.2)
P 		1191.1
(-0)
P 		846.4
(-3)
P 		696
avr 1230.2
(0.5) 		1491.5
(3) 		1227.4
(0.4) 		1161.9
(-0.2) 		1160.4
(-0.2) 		870.2
(-3) 		621
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10359
Sequence Type Exemplar sequence
Representative Public ID LLC1.2 NCBI
Target Description LLC1.2 /REP_DB=WormBase Gene ID /WP=CE16261 /TR=O17954 /GB=CAB05250.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070351 NCBI Caenorhabditis elegans LLC1.2 (LLC1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000039836 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14456967:14463998:1 11/11 None
LLC1.2 ENSEMBL cdna:known chromosome:CEL140:IV:14456882:14464059:1 gene:LLC1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039832 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14458654-14464004(+) 97.56 97.56
Public Domain and Genome References
Gene Title
Ensembl LLC1.2
Entrez Gene 178386 Entrez gene
SwissProt O17954 EMBL-EBI
WormBase CE16261 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05250 Hypothetical protein LLC1.2 [Caenorhabditis elegans] ref|NP_502752.1| LLC1.2 [Caenorhabditis elegans] 1.0E-164
blast CAE73953 Hypothetical protein CBG21578 [Caenorhabditis briggsae] 1.0E-140
blast AAA83510 Hypothetical protein F19C7.1 [Caenorhabditis elegans] ref|NP_500597.1| F19C7.1 [Caenorhabditis elegans] 9.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 9.7E-66
Sequence
Target Sequence 
>C. ELEGANS:177374_AT
gactgccgatatgttgaccgtttgcaacagtctcgaaactttcaatctctgcatgcacgg
aaaccgtggatgtttggacatttacaacctaatcaagaagactgacattaataatgctta
cgcggtggaggcaacctatagacaatactcgtccttcaactgtggcccaggaattaatac
tctcgagcacgaaggcctcagctgcccacaacgagttctcaacacccaatcaaatattct
catcggatgcgttcaaacctacatcaccaacgtggcaaatgacgctacaaacggttgcaa
gtacggtcaagacctcatgaattgctggtcagccccattccagactgctccctgccgcag
agaagctggagttgccacgtggtgggcttgtgagcagaataaggttttcgtgaagactac
cttcccaagttgcccattggcttgtgatgaaaaattcggcccattcttcggtgccaacgc
taattggctcgatactcaccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGCCGATATGTTGACCGTTTGC 613 373 228 Antisense
CGAAACTTTCAATCTCTGCATGCAC 396 253 261 Antisense
AATACTCTCGAGCACGAAGGCCTCA 233 173 403 Antisense
CACAACGAGTTCTCAACACCCAATC 652 191 434 Antisense
TTCAAACCTACATCACCAACGTGGC 26 683 479 Antisense
ACCTCATGAATTGCTGGTCAGCCCC 274 83 539 Antisense
TGCTCCCTGCCGCAGAGAAGCTGGA 693 581 573 Antisense
TGCCACGTGGTGGGCTTGTGAGCAG 627 585 600 Antisense
TTCCCAAGTTGCCCATTGGCTTGTG 178 697 649 Antisense
TGAAAAATTCGGCCCATTCTTCGGT 465 571 675 Antisense
GCTAATTGGCTCGATACTCACCACA 134 301 706 Antisense
Sequence Source Affymetrix Proprietary Database