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[177373_s_at]

Description JC8.11 /REP_DB=WormBase Gene ID /WP=CE28343 /TR=O62296 /GB=CAB05233.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 81      6grp_total > 77      4grp_total > 53      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 368.5
(3)
P 		329.1
(1.3)
P 		238.8
(-2.6)
P 		230.1
(-3)
P 		138
B 300.2
(1.9)
P 		326.8
(3)
P 		298.1
(1.8)
P 		187.6
(-3)
P 		139
C 384.2
(3)
P 		380
(2.8)
P 		342.9
(1.1)
P 		254.2
(-3)
P 		130
avr 351
(3) 		345.3
(2.7) 		293.3
(0.3) 		224
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 192.5
(-3)
P 		325.7
(1.8)
P 		233.5
(-1.5)
P 		267.2
(-0.3)
P 		263.3
(-0.5)
P 		360
(3)
P 		168
B 256.6
(-1.5)
P 		220.2
(-3)
P 		318
(1.1)
P 		286.8
(-0.2)
P 		290.6
(-0.1)
P 		365
(3)
P 		145
C 295.9
(0.4)
P 		281.2
(-0.1)
P 		255.2
(-1.1)
P 		204.4
(-3)
P 		299.3
(0.5)
P 		366
(3)
P 		162
avr 248.3
(-3) 		275.7
(-1.6) 		268.9
(-1.9) 		252.8
(-2.8) 		284.4
(-1.1) 		363.7
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 134.2
(3)
P 		71.4
(-0.7)
P 		62.4
(-1.3)
P 		33.7
(-3)
P 		101
B 95.7
(3)
P 		80.7
(1.4)
P 		69.1
(0.1)
P 		40
(-3)
P 		56
C 127.2
(3)
P 		109.3
(1.7)
P 		119.5
(2.5)
P 		42.9
(-3)
P 		84
avr 119
(3) 		87.1
(0.6) 		83.7
(0.4) 		38.9
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 35.5
(-3)
P 		115.9
(3)
P 		50.9
(-1.9)
P 		67.8
(-0.6)
P 		79.4
(0.3)
P 		87.6
(0.9)
P 		80
B 89.3
(-1.5)
P 		73.3
(-3)
P 		77.2
(-2.6)
P 		76
(-2.7)
P 		118.1
(1.3)
P 		136.1
(3)
P 		63
C 109.7
(2.1)
P 		85.8
(0.3)
P 		65
(-1.2)
P 		41.1
(-3)
P 		96.8
(1.1)
P 		122.5
(3)
P 		81
avr 78.2
(-1.1) 		91.7
(0.4) 		64.4
(-2.7) 		61.6
(-3) 		98.1
(1.1) 		115.4
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177373_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9345
Sequence Type Exemplar sequence
Representative Public ID JC8.11 NCBI
Target Description JC8.11 /REP_DB=WormBase Gene ID /WP=CE28343 /TR=O62296 /GB=CAB05233.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070022(11), NM_070139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070022 NCBI Caenorhabditis elegans T23B5.1 (T23B5.1) mRNA, complete cds. 11/11 A 
NM_070139 NCBI Caenorhabditis elegans JC8.11 (JC8.11) mRNA, complete cds. 11/11 None
SNAP00000002831 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12677769:12684349:-1 11/11 None
GENEFINDER00000002840 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12677769:12684349:-1 11/11 None
SNAP00000008997 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13228045:13231997:1 11/11 None
GENEFINDER00000009008 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13228045:13231997:1 11/11 None
T23B5.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:12677377:12684349:-1 gene:T23B5.1 11/11 A 
T23B5.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:12677377:12684351:-1 gene:T23B5.1 11/11 A 
JC8.11 ENSEMBL cdna:known chromosome:CEL140:IV:13228289:13232031:1 gene:JC8.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13228293-13230170(+) 96.45 100.0
Public Domain and Genome References
Gene Title

Ensembl T23B5.1
JC8.11
Entrez Gene 178221 Entrez gene
178276 Entrez gene
SwissProt O62296 EMBL-EBI
O02325 EMBL-EBI
WormBase CE28343 Wormbase
CE18281 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07676 Hypothetical protein T23B5.1 [Caenorhabditis elegans] ref|NP_502423.1| T23B5.1 [Caenorhabditis elegans] 0.0
blast CAE59993 Hypothetical protein CBG03486 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177373_S_AT
tccgtctcttcagttgtcgtgaaatcttcgatattcattgtcaagactacggaggagttc
gctatcgatccgaatacgtgaaaattggcgaattagatgccgaacaaccgtactggtgtg
catcagctgcagattactctcaatttgaacttctttctggttcagtagccatgcattcgg
tcgattttagcagtattgccaatttgaaggattcacttgccaactcgaattctttcaaaa
ttcgaccggcgaaagatggagtagcacacggattttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGTCTCTTCAGTTGTCGTGAAAT 334 595 113 Antisense
GAAATCTTCGATATTCATTGTCAAG 280 363 133 Antisense
GATGCCGAACAACCGTACTGGTGTG 56 387 208 Antisense
AACCGTACTGGTGTGCATCAGCTGC 128 147 218 Antisense
GCATCAGCTGCAGATTACTCTCAAT 458 309 232 Antisense
AACTTCTTTCTGGTTCAGTAGCCAT 606 137 260 Antisense
GTTCAGTAGCCATGCATTCGGTCGA 359 445 272 Antisense
ATTCGGTCGATTTTAGCAGTATTGC 359 9 287 Antisense
TGAAGGATTCACTTGCCAACTCGAA 97 575 317 Antisense
TCACTTGCCAACTCGAATTCTTTCA 69 627 325 Antisense
GATGGAGTAGCACACGGATTTTCTG 96 407 367 Antisense
Sequence Source Affymetrix Proprietary Database