[Home] | [Total List]

[177372_s_at]

Description M106.2 /REP_DB=WormBase Gene ID /WP=CE01605 /TR=Q09592 /GB=CAA87049.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 69      4grp_highest_8_8 > 62      4grp_high_8_8 > 27      6grp_highest_nonorm > 92      6grp_total > 79      4grp_total > 37      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 301.1
(0.4)
P 		344.6
(3)
P 		245.1
(-3)
P 		258.7
(-2.2)
P 		100
B 228.2
(1.6)
P 		230.4
(1.8)
P 		185.7
(-3)
P 		241.4
(3)
P 		56
C 359.6
(3)
P 		231.3
(-2.3)
P 		213.7
(-3)
P 		298.4
(0.5)
P 		146
avr 296.3
(3) 		268.8
(1) 		214.8
(-3) 		266.2
(0.8) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 306.7
(0.8)
P 		240.4
(-1.7)
P 		206.3
(-3)
P 		314.4
(1.1)
P 		365.6
(3)
P 		304.1
(0.7)
P 		159
B 282
(0)
P 		325.7
(0.9)
P 		138.1
(-3)
P 		247.7
(-0.7)
P 		332.5
(1.1)
P 		424.3
(3)
P 		286
C 254.2
(-0.6)
P 		293.8
(0.4)
P 		158
(-3)
P 		331.3
(1.4)
P 		257.5
(-0.5)
P 		394.2
(3)
P 		236
avr 281
(0.3) 		286.6
(0.5) 		167.5
(-3) 		297.8
(0.8) 		318.5
(1.4) 		374.2
(3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 109.6
(3)
P 		74.8
(0.1)
P 		64.1
(-0.8)
P 		37.9
(-3)
P 		72
B 72.8
(3)
P 		56.9
(-0.2)
P 		43
(-3)
P 		51.4
(-1.3)
P 		30
C 119
(3)
P 		66.5
(-1.6)
P 		74.5
(-0.9)
P 		50.3
(-3)
P 		69
avr 100.5
(3) 		66.1
(-0.8) 		60.5
(-1.4) 		46.5
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 56.5
(-1.9)
P 		85.5
(0.7)
P 		44.9
(-3)
P 		79.7
(0.2)
P 		110.3
(3)
P 		74
(-0.3)
P 		65
B 98.1
(0.1)
P 		108.4
(0.6)
P 		33.5
(-3)
P 		65.6
(-1.5)
P 		135.1
(1.9)
P 		158.2
(3)
P 		125
C 94.2
(0.5)
P 		89.6
(0.2)
P 		40.2
(-3)
P 		66.6
(-1.3)
P 		83.3
(-0.2)
P 		132
(3)
P 		92
avr 82.9
(0.2) 		94.5
(1) 		39.5
(-3) 		70.6
(-0.7) 		109.6
(2.1) 		121.4
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177372_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3591
Sequence Type Exemplar sequence
Representative Public ID M106.2 NCBI
Target Description M106.2 /REP_DB=WormBase Gene ID /WP=CE01605 /TR=Q09592 /GB=CAA87049.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063932 NCBI Caenorhabditis elegans M106.2 (M106.2) mRNA, complete cds. 11/11 None
SNAP00000018717 ENSEMBL cdna:SNAP chromosome:CEL140:II:10841509:10843532:-1 11/11 None
GENEFINDER00000018730 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10841509:10843532:-1 11/11 None
M106.2 ENSEMBL cdna:known chromosome:CEL140:II:10841297:10847508:-1 gene:M106.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10841505-10847505(-) 96.99 100.0
Public Domain and Genome References
Gene Title
Ensembl M106.2
Entrez Gene 174670 Entrez gene
SwissProt Q09592 EMBL-EBI
WormBase CE30680 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87049 Hypothetical protein M106.2 [Caenorhabditis elegans] ref|NP_496333.2| M106.2 [Caenorhabditis elegans] 0.0
blast CAE59597 Hypothetical protein CBG03004 [Caenorhabditis briggsae] 1.0E-103
blast CAA87049 Hypothetical protein M106.2 [Caenorhabditis elegans] ref|NP_496333.2| M106.2 [Caenorhabditis elegans] 3.0E-97
blast CAE59598 Hypothetical protein CBG03005 [Caenorhabditis briggsae] 6.0E-83
blast CAE59598 Hypothetical protein CBG03005 [Caenorhabditis briggsae] 3.0E-82
blast CAA87049 Hypothetical protein M106.2 [Caenorhabditis elegans] ref|NP_496333.2| M106.2 [Caenorhabditis elegans] 2.0E-80
blast CAE59598 Hypothetical protein CBG03005 [Caenorhabditis briggsae] 5.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496333.2 4 341-363,370-392,412-434,441-463
M106.2 4 341-363,370-392,412-434,441-463
SNAP00000018717 4 16-38,48-70,82-104,119-141
GENEFINDER00000018730 5 13-35,106-124,129-151,163-185,200-222
Sequence
Target Sequence 
>C. ELEGANS:177372_S_AT
tgcaatggcctttcggggttcttatgggatttcagacgctcttctctctcatctcactga
tcgtcttctactttgctccatttctatacgaaggaacatcattcgtcattttcattctca
cacttctcctcgtctgcagtattgttcacaacattatccacgttttcggattccatcgtc
gcgtttttctcatcgctggacgcgctctgtacattccggcgacgcttttggtattcctaa
cgtctgcagtatgctgtatcggaatgggtgtctcaacgctgattgtactcatcggatttg
ttgattcgcttcgtttcagtttccggctcattattgtctacgcgattctcacggcaacat
gtgcaattctgacatttgcgtgcacaaaaatcgtgatgctcctgttccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATGGCCTTTCGGGGTTCTTAT 523 571 1016 Antisense
TCTACTTTGCTCCATTTCTATACGA 121 615 1082 Antisense
ACATCATTCGTCATTTTCATTCTCA 54 107 1111 Antisense
TCCTCGTCTGCAGTATTGTTCACAA 413 593 1142 Antisense
ATCCACGTTTTCGGATTCCATCGTC 4 41 1171 Antisense
ACATTCCGGCGACGCTTTTGGTATT 626 103 1226 Antisense
GGTATTCCTAACGTCTGCAGTATGC 663 505 1245 Antisense
TCGGAATGGGTGTCTCAACGCTGAT 661 605 1274 Antisense
CGGATTTGTTGATTCGCTTCGTTTC 482 239 1308 Antisense
GTTTCCGGCTCATTATTGTCTACGC 258 451 1334 Antisense
AAAAATCGTGATGCTCCTGTTCCGT 569 129 1401 Antisense
Sequence Source Affymetrix Proprietary Database