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[177371_s_at]

Description M02B7.3 /REP_DB=WormBase Gene ID /WP=CE12324 /GEN=osm-3 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=kinesin
Cluster 6grp_total > 37      4grp_total > 22      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 185.9
(3)
P 		70.5
(-2.2)
A 		51.9
(-3)
A 		146.2
(1.2)
P 		134
B 147.4
(1.8)
P 		98.6
(-0.4)
A 		41.3
(-3)
A 		173.9
(3)
P 		133
C 160.2
(2.2)
P 		66.1
(-2.4)
A 		54.6
(-3)
A 		175.6
(3)
P 		121
avr 164.5
(3) 		78.4
(-1.5) 		49.3
(-3) 		165.2
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 120.2
(3)
P 		107.1
(1.1)
P 		79.3
(-3)
A 		112.1
(1.8)
P 		84.3
(-2.3)
A 		115.9
(2.4)
P 		41
B 134.4
(2.9)
P 		110
(-0.3)
P 		93.7
(-2.4)
A 		90.2
(-2.8)
A 		88.8
(-3)
A 		135.3
(3)
P 		47
C 135.1
(3)
P 		84.2
(-2.3)
P 		105.9
(-0)
A 		77.1
(-3)
A 		90.8
(-1.6)
P 		101.1
(-0.5)
P 		58
avr 129.9
(3) 		100.4
(-1.2) 		93
(-2.3) 		93.1
(-2.3) 		88
(-3) 		117.4
(1.2) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 67.7
(3)
P 		15.3
(-2.8)
A 		13.6
(-3)
A 		21.4
(-2.1)
P 		54
B 47
(3)
P 		24.4
(-0.6)
A 		9.6
(-3)
A 		37.1
(1.4)
P 		37
C 53
(3)
P 		19
(-3)
A 		19
(-3)
A 		29.6
(-1.1)
P 		34
avr 55.9
(3) 		19.6
(-2.2) 		14.1
(-3) 		29.4
(-0.8) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 22.2
(-1.6)
P 		38.1
(3)
P 		17.3
(-3)
A 		28.4
(0.2)
P 		25.4
(-0.7)
A 		28.2
(0.1)
P 		21
B 46.7
(2.2)
P 		36.6
(0)
P 		22.7
(-3)
A 		23.9
(-2.7)
A 		36.1
(-0.1)
A 		50.5
(3)
P 		28
C 50.1
(3)
P 		25.7
(-1.2)
P 		26.9
(-1)
A 		15.5
(-3)
A 		29.4
(-0.6)
P 		33.8
(0.2)
P 		35
avr 39.7
(3) 		33.5
(0.9) 		22.3
(-3) 		22.6
(-2.9) 		30.3
(-0.2) 		37.5
(2.2) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177371_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11042
Sequence Type Exemplar sequence
Representative Public ID M02B7.3 NCBI
Target Description M02B7.3 /REP_DB=WormBase Gene ID /WP=CE12324 /GEN=osm-3 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=kinesin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028137(11), NM_171308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028137 NCBI Caenorhabditis elegans OSMotic avoidance abnormal family member (osm-3) (osm-3) mRNA, complete cds. 11/11 None
NM_171308 NCBI Caenorhabditis elegans OSMotic avoidance abnormal family member (osm-3) (osm-3) mRNA, complete cds. 11/11 None
SNAP00000028168 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3796381:3803367:-1 11/11 None
GENEFINDER00000028180 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3796381:3799081:-1 11/11 None
M02B7.3b ENSEMBL cdna:known chromosome:CEL140:IV:3796331:3800456:-1 gene:M02B7.3 11/11 None
M02B7.3a ENSEMBL cdna:known chromosome:CEL140:IV:3796381:3799325:-1 gene:M02B7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3796386-3799358(-) 100.0 100.0
Public Domain and Genome References
Ensembl M02B7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM97997 Osmotic avoidance abnormal protein 3, isoform b [Caenorhabditis elegans] ref|NP_001023308.1| OSMotic avoidance abnormal family member (osm-3) [Caenorhabditis elegans] sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 (Kinesin-like protein osm-3) 0.0
blast AAF99084 Osm-3 [Caenorhabditis elegans] 0.0
blast AAM97996 Osmotic avoidance abnormal protein 3, isoform a [Caenorhabditis elegans] ref|NP_741362.1| OSMotic avoidance abnormal family member (osm-3) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Pfam IPR001752 EMBL-EBI Kinesin, motor region 6.9E-28
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000028168 2 5-27,139-161
Sequence
Target Sequence 
>C. ELEGANS:177371_S_AT
aggatctccacggcgaattcgaactggatcgtctcgattatctagacacaattcggaagc
aggaccagcagttgaagctccttatgcagattatggacaaaatccagccgatcatcaaga
aagatacgaattatagtaacgtggatcggataaagaaggaggcggtgtggaatgaagacg
agagtcgatggattttgccggaaatgtcgatgagtcggactattctgccgttggctaata
atggttatatgcaagaacctgctcggcaagagaacaccttattacggtctaactttgacg
acaaactacgcgagcggctagcgaaaagtgactcggaaaacctggcaaacagctacttca
agccagtgaagcagatcaatgtgatcaacaagtacaagagtgatcaaaaattatcaactt
ccaaatcgctatttccatccaagaccccaacattcgatggtcttgtcaacggagtcgtct
acactgatgctctctacgagcgggctcaatctgcaaaacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATCTCCACGGCGAATTCGAACT 414 57 1472 Antisense
GGACCAGCAGTTGAAGCTCCTTATG 384 523 1533 Antisense
TGAGTCGGACTATTCTGCCGTTGGC 486 565 1682 Antisense
GAACCTGCTCGGCAAGAGAACACCT 297 345 1726 Antisense
GAGAACACCTTATTACGGTCTAACT 381 389 1741 Antisense
GCAAACAGCTACTTCAAGCCAGTGA 342 317 1816 Antisense
TCCAAATCGCTATTTCCATCCAAGA 385 587 1891 Antisense
ATCCAAGACCCCAACATTCGATGGT 22 41 1908 Antisense
GATGGTCTTGTCAACGGAGTCGTCT 121 409 1927 Antisense
CGTCTACACTGATGCTCTCTACGAG 255 247 1947 Antisense
GAGCGGGCTCAATCTGCAAAACGAC 262 385 1969 Antisense
Sequence Source Affymetrix Proprietary Database