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[177368_at]

Description M60.1 /REP_DB=WormBase Gene ID /WP=CE04774 /TR=Q9GYM7 /GB=AAF99995.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 13      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 14      6grp_total > 13      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11338
1 2 3 4 range
A 10584
(3)
P 		4986.9
(-0.3)
P 		5144.2
(-0.2)
P 		539.3
(-3)
P 		10045
B 11877.3
(3)
P 		4459.6
(-1)
P 		5816.7
(-0.2)
P 		626.4
(-3)
P 		11251
C 10336.5
(3)
P 		4104.9
(-0.8)
P 		4752.9
(-0.4)
P 		614.4
(-3)
P 		9722
avr 10932.6
(3) 		4517.1
(-0.7) 		5237.9
(-0.3) 		593.4
(-3) 		10339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3703
1 2 3 4 5 6 range
A 4766.4
(2)
P 		5383.8
(3)
P 		3610.1
(0.1)
P 		4081.3
(0.9)
P 		2857
(-1.1)
P 		1705.9
(-3)
P 		3678
B 5251.6
(3)
P 		5119
(2.8)
P 		4814.6
(2.2)
P 		3632.8
(0.2)
P 		2686.2
(-1.4)
P 		1777.6
(-3)
P 		3474
C 5172.2
(3)
P 		5167.7
(3)
P 		4283
(1.5)
P 		4091
(1.1)
P 		3057.5
(-0.6)
P 		1681
(-3)
P 		3491
avr 5063.4
(2.7) 		5223.5
(3) 		4235.9
(1.3) 		3935
(0.8) 		2866.9
(-1) 		1721.5
(-3) 		3502
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3775
1 2 3 4 range
A 3853.6
(3)
P 		1082.5
(-1.4)
P 		1344.8
(-1)
P 		78.9
(-3)
P 		3775
B 3787.6
(3)
P 		1101.4
(-1.4)
P 		1347.9
(-1)
P 		133.5
(-3)
P 		3654
C 3421.7
(3)
P 		1180.2
(-1.1)
P 		1656.5
(-0.2)
P 		103.6
(-3)
P 		3318
avr 3687.6
(3) 		1121.4
(-1.3) 		1449.7
(-0.7) 		105.3
(-3) 		3582

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1502
1 2 3 4 5 6 range
A 878.7
(-1.1)
P 		1914.7
(3)
P 		786.2
(-1.5)
P 		1035.1
(-0.5)
P 		862.1
(-1.2)
P 		415.3
(-3)
P 		1499
B 1827.3
(3)
P 		1703.9
(2.4)
P 		1169.1
(-0.4)
P 		962.2
(-1.5)
P 		1091.4
(-0.8)
P 		662.9
(-3)
P 		1164
C 1917.1
(3)
P 		1576.8
(1.5)
P 		1090.1
(-0.7)
P 		822.7
(-1.8)
P 		989.4
(-1.1)
P 		562.7
(-3)
P 		1354
avr 1541
(2) 		1731.8
(3) 		1015.1
(-0.6) 		940
(-1) 		981
(-0.8) 		547
(-3) 		1185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16338
Sequence Type Exemplar sequence
Representative Public ID M60.1 NCBI
Target Description M60.1 /REP_DB=WormBase Gene ID /WP=CE04774 /TR=Q9GYM7 /GB=AAF99995.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076990 NCBI Caenorhabditis elegans M60.2 (M60.2) mRNA, complete cds. 11/11 A 
SNAP00000012320 ENSEMBL cdna:SNAP chromosome:CEL140:X:8241965:8247749:1 11/11 None
GENEFINDER00000012326 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8246338:8247749:1 11/11 None
M60.2.2 ENSEMBL cdna:known chromosome:CEL140:X:8242237:8247805:1 gene:M60.2 11/11 A 
M60.2.1 ENSEMBL cdna:known chromosome:CEL140:X:8242239:8247805:1 gene:M60.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8246713-8247748(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M60.2
Entrez Gene 181079 Entrez gene
SwissProt Q9GYM9 EMBL-EBI
WormBase CE28630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99995 Hypothetical protein M60.2 [Caenorhabditis elegans] ref|NP_509391.1| M60.2 [Caenorhabditis elegans] 0.0
blast CAE74863 Hypothetical protein CBG22718 [Caenorhabditis briggsae] 0.0
blast CAE74863 Hypothetical protein CBG22718 [Caenorhabditis briggsae] 1.0E-180
Sequence
Target Sequence 
>C. ELEGANS:177368_AT
acaacatacactcaagacctcttcactgctgacgtttgcaaagctgaaccagctatggga
ggattcagaaaacaatacctccaaggtgttttcaacactttcactgcaaccccaatgttt
gcatcggcatttgcttatcttcaatcgatcaactacaaagagactagcaacttgaccaac
ttcaaaaccaaagttttgtggcctttgtggttcggaacgtacacgcgatgcaaaggtcca
cttggtagttcgggatgggagcatgtattctccggtgagatcaagagcaacgaagtcgat
ggacaacacgactgggtcagatactacacagagcaaaaagccgataaaatggtttatgat
ggttattacactcatgatgagaacttaatcggaacattccaatacaaatggaatggagcc
ttgaagccaaagggtggatttttcactggaacttcaccagcattcgatttctcaatccta
tctgtttgtgcacttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACATACACTCAAGACCTCTTCA 147 113 166 Antisense
CCTCTTCACTGCTGACGTTTGCAAA 215 267 183 Antisense
GTGTTTTCAACACTTTCACTGCAAC 638 485 251 Antisense
GCAACCCCAATGTTTGCATCGGCAT 177 321 271 Antisense
ATCGGCATTTGCTTATCTTCAATCG 371 35 288 Antisense
TTTGTGGCCTTTGTGGTTCGGAACG 401 611 360 Antisense
GTACACGCGATGCAAAGGTCCACTT 615 459 384 Antisense
AGGTCCACTTGGTAGTTCGGGATGG 432 57 399 Antisense
GATGGACAACACGACTGGGTCAGAT 283 407 463 Antisense
AGCATTCGATTTCTCAATCCTATCT 237 79 624 Antisense
CAATCCTATCTGTTTGTGCACTTGC 159 183 638 Antisense
Sequence Source Affymetrix Proprietary Database