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[177367_at]

Description CC8.1 /REP_DB=WormBase Gene ID /WP=CE20616 /TR=Q9N5V2 /GB=AAF39788.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 136.6
(3)
A 		105.1
(0.8)
A 		51.4
(-3)
A 		105.5
(0.8)
A 		85
B 108.2
(3)
A 		35.8
(-3)
A 		86.3
(1.2)
A 		72.5
(0)
A 		72
C 119.2
(1.2)
A 		92.9
(-0.7)
A 		62.3
(-3)
A 		142.9
(3)
A 		81
avr 121.3
(3) 		77.9
(-1.8) 		66.7
(-3) 		107
(1.4) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 139.5
(3)
A 		47.8
(-1.5)
A 		35.3
(-2.1)
A 		69.3
(-0.4)
A 		29.6
(-2.4)
A 		16.3
(-3)
A 		123
B 102.7
(3)
A 		58.1
(-0.5)
A 		63.6
(-0.1)
A 		44.4
(-1.6)
A 		33.3
(-2.5)
A 		26.8
(-3)
A 		76
C 77.2
(3)
A 		53.3
(1)
A 		31.4
(-0.8)
A 		5.7
(-3)
A 		70.7
(2.5)
A 		43
(0.1)
A 		72
avr 106.5
(3) 		53.1
(-1.1) 		43.4
(-1.9) 		39.8
(-2.1) 		44.5
(-1.8) 		28.7
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 49.7
(3)
A 		22.8
(-1.4)
A 		13.4
(-3)
A 		15.4
(-2.7)
A 		36
B 34.5
(3)
A 		8.9
(-3)
A 		20
(-0.4)
A 		15.4
(-1.5)
A 		26
C 39.4
(3)
A 		26.7
(-1.3)
A 		21.7
(-3)
A 		24.1
(-2.2)
A 		18
avr 41.2
(3) 		19.5
(-2.7) 		18.4
(-3) 		18.3
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 25.7
(3)
A 		17
(0.6)
A 		7.7
(-2)
A 		17.6
(0.8)
A 		8.9
(-1.6)
A 		4
(-3)
A 		22
B 35.7
(3)
A 		19.3
(-0.8)
A 		15.4
(-1.7)
A 		11.8
(-2.6)
A 		13.5
(-2.2)
A 		10
(-3)
A 		26
C 28.6
(3)
A 		16.2
(0.3)
A 		8
(-1.5)
A 		1.1
(-3)
A 		22.9
(1.8)
A 		14.4
(-0.1)
A 		28
avr 30
(3) 		17.5
(-0.7) 		10.4
(-2.7) 		10.2
(-2.8) 		15.1
(-1.4) 		9.5
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10719
Sequence Type Exemplar sequence
Representative Public ID CC8.1 NCBI
Target Description CC8.1 /REP_DB=WormBase Gene ID /WP=CE20616 /TR=Q9N5V2 /GB=AAF39788.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067989 NCBI Caenorhabditis elegans CC8.1 (CC8.1) mRNA, complete cds. 11/11 None
SNAP00000004437 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3638280:3639815:1 11/11 None
GENEFINDER00000004442 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3638350:3639815:1 11/11 None
CC8.1 ENSEMBL cdna:known chromosome:CEL140:IV:3638350:3639815:1 gene:CC8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3638355-3639821(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl CC8.1
Entrez Gene 183874 Entrez gene
SwissProt Q9N5V2 EMBL-EBI
WormBase CE20616 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39788 Hypothetical protein CC8.1 [Caenorhabditis elegans] ref|NP_500390.1| CC8.1 [Caenorhabditis elegans] 6.0E-64
blast AAF39788 Hypothetical protein CC8.1 [Caenorhabditis elegans] ref|NP_500390.1| CC8.1 [Caenorhabditis elegans] 8.0E-64
blast CAE63773 Hypothetical protein CBG08311 [Caenorhabditis briggsae] 2.0E-49
blast CAE63773 Hypothetical protein CBG08311 [Caenorhabditis briggsae] 3.0E-49
Sequence
Target Sequence 
>C. ELEGANS:177367_AT
gccgccatgtcgttcatcgaaaacgagctgatccgaacccaagactcctccaagtcatcc
ggctccacaggcgagatggagtcaagctcagcgtccacagcctcgagtgcctcgagctcc
aaaaatacaggcacgcaggagggcggtgaagcttctgtgatcacacctccaccgcttccg
atcccaatggcggttacaccttcaccatccgccacgtcatcagcttcaaatggagggcct
gcggtgaaacggagcagagtttcgattacagaaggaatgacgccagtagcctccagaaac
gccgctgcagccgccgcagctagcctcgggctcagcttcttcccggggctctcccagtgg
gcaacgacacgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCCATGTCGTTCATCGAAAACG 468 285 19 Antisense
TCGAAAACGAGCTGATCCGAACCCA 263 593 35 Antisense
ATCCGGCTCCACAGGCGAGATGGAG 479 39 75 Antisense
GATGGAGTCAAGCTCAGCGTCCACA 480 407 93 Antisense
TCGAGTGCCTCGAGCTCCAAAAATA 76 603 121 Antisense
GGCACGCAGGAGGGCGGTGAAGCTT 65 525 148 Antisense
TGAAGCTTCTGTGATCACACCTCCA 333 575 165 Antisense
GCTTCCGATCCCAATGGCGGTTACA 564 305 192 Antisense
GCTTCAAATGGAGGGCCTGCGGTGA 119 305 241 Antisense
GAAGGAATGACGCCAGTAGCCTCCA 635 333 289 Antisense
CTCCCAGTGGGCAACGACACGTGAA 378 233 369 Antisense
Sequence Source Affymetrix Proprietary Database