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[177366_s_at]

Description JC8.6B /REP_DB=WormBase Gene ID /WP=CE17990 /TR=O62295 /GB=CAB05228.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 23      6grp_total > 77      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 324.5
(-3)
M 		351.9
(-2.3)
P 		417
(-0.7)
M 		566.6
(3)
P 		242
B 307.7
(-3)
M 		342
(-0.3)
P 		382.5
(2.8)
P 		385.2
(3)
P 		78
C 319.5
(-3)
P 		336.3
(-1.2)
P 		374.8
(3)
P 		371.8
(2.7)
P 		55
avr 317.2
(-3) 		343.4
(-1.7) 		391.4
(0.6) 		441.2
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 591
1 2 3 4 5 6 range
A 308.6
(-3)
A 		312.1
(-2.9)
P 		307.4
(-3)
P 		368.2
(-2.2)
A 		477.8
(-0.8)
P 		768.6
(3)
P 		461
B 319.2
(-2.9)
A 		310.1
(-3)
P 		345.9
(-2.5)
P 		344.8
(-2.6)
P 		491.7
(-0.7)
P 		783.4
(3)
P 		473
C 213.8
(-3)
A 		406
(-1)
P 		294
(-2.2)
A 		373.2
(-1.4)
P 		411.8
(-1)
P 		804.6
(3)
P 		591
avr 280.5
(-3) 		342.7
(-2.3) 		315.8
(-2.6) 		362.1
(-2) 		460.4
(-0.9) 		785.5
(3) 		505
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 118.2
(3)
M 		76.4
(-3)
P 		109
(1.7)
M 		82.9
(-2.1)
P 		42
B 98.1
(3)
M 		84.5
(-2.1)
P 		88.6
(-0.6)
P 		82.1
(-3)
P 		16
C 105.8
(0.8)
P 		96.7
(0)
P 		130.6
(3)
P 		62.7
(-3)
P 		68
avr 107.4
(2.6) 		85.9
(-1.2) 		109.4
(3) 		75.9
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 56.9
(-3)
A 		111
(-0.5)
P 		66.9
(-2.5)
P 		93.4
(-1.3)
A 		144.2
(1)
P 		187.1
(3)
P 		130
B 111.1
(-2.2)
A 		103.2
(-2.4)
P 		84
(-3)
P 		91.3
(-2.8)
P 		199.8
(0.3)
P 		292.1
(3)
P 		208
C 79.2
(-2.9)
A 		123.9
(-1.5)
P 		74.8
(-3)
A 		75
(-3)
P 		133.3
(-1.2)
P 		269.4
(3)
P 		195
avr 82.4
(-2.8) 		112.7
(-1.7) 		75.2
(-3) 		86.6
(-2.6) 		159.1
(-0.1) 		249.5
(3) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177366_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9920
Sequence Type Exemplar sequence
Representative Public ID JC8.6B NCBI
Target Description JC8.6B /REP_DB=WormBase Gene ID /WP=CE17990 /TR=O62295 /GB=CAB05228.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070143(11), NM_070144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070143 NCBI Caenorhabditis elegans JC8.6a (JC8.6) mRNA, complete cds. 11/11 None
NM_070144 NCBI Caenorhabditis elegans JC8.6b (JC8.6) mRNA, complete cds. 11/11 None
SNAP00000009000 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13241037:13243128:1 11/11 None
GENEFINDER00000009016 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13241037:13243307:1 11/11 None
JC8.6a ENSEMBL cdna:known chromosome:CEL140:IV:13241021:13243338:1 gene:JC8.6 11/11 None
JC8.6b ENSEMBL cdna:known chromosome:CEL140:IV:13241031:13243128:1 gene:JC8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13241042-13243134(+) 100.0 100.0
Public Domain and Genome References
Ensembl JC8.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05229 Hypothetical protein JC8.6a [Caenorhabditis elegans] ref|NP_502544.1| JC8.6a [Caenorhabditis elegans] 0.0
blast CAB05228 Hypothetical protein JC8.6b [Caenorhabditis elegans] ref|NP_502545.1| JC8.6b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005172 EMBL-EBI Tesmin/TSO1-like CXC domain 2.4E-23
Pfam IPR005172 EMBL-EBI Tesmin/TSO1-like CXC domain 2.4E-23
Pfam IPR005172 EMBL-EBI Tesmin/TSO1-like CXC domain 2.4E-23
Pfam IPR005172 EMBL-EBI Tesmin/TSO1-like CXC domain 2.4E-23
Pfam IPR005172 EMBL-EBI Tesmin/TSO1-like CXC domain 5.9E-24
Pfam IPR005172 EMBL-EBI Tesmin/TSO1-like CXC domain 2.4E-23
Pfam IPR005172 EMBL-EBI Tesmin/TSO1-like CXC domain 2.4E-23
Pfam IPR005172 EMBL-EBI Tesmin/TSO1-like CXC domain 2.4E-23
Sequence
Target Sequence 
>C. ELEGANS:177366_S_AT
gttccgtgtaccgatcgatgcaagtgcaaaggatgtcagaatactgaaacatacagaatg
acaagatacaagaactccggtggtgccgtgtccaatacgaatgccctgatgtcattgacc
aacgcttccagcacagcgactccagattctggtccgggaagtgtggtgaccgatgagcat
ggagacgactacgaggatatgcttctttcgcataaaccgaaggtcgagatggatcctaga
cgcttcccgtggtactatatgaccgatgaagtcgttgaggcagccactatgtgcatggtt
gctcaagctgaagaagctttaaactacgaaaaagtgcaaaccgaagacgaaaaactcatc
aatatggagaagcttgtccttcgtgaattcggccgctgtctcgaacaaatgatcacaaac
acaactgagctcacacaagatcttgatgccgctccaacggatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCGTGTACCGATCGATGCAAGT 16 441 808 Antisense
ACAAGAACTCCGGTGGTGCCGTGTC 527 111 875 Antisense
GTCCAATACGAATGCCCTGATGTCA 206 477 897 Antisense
TGATGTCATTGACCAACGCTTCCAG 395 567 914 Antisense
GCACAGCGACTCCAGATTCTGGTCC 423 317 938 Antisense
TCGAGATGGATCCTAGACGCTTCCC 299 603 1031 Antisense
ACGCTTCCCGTGGTACTATATGACC 611 91 1047 Antisense
GCAGCCACTATGTGCATGGTTGCTC 563 313 1087 Antisense
GAAGCTTGTCCTTCGTGAATTCGGC 573 341 1176 Antisense
TCGGCCGCTGTCTCGAACAAATGAT 12 607 1196 Antisense
TCTTGATGCCGCTCCAACGGATGAC 223 617 1248 Antisense
Sequence Source Affymetrix Proprietary Database