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[177365_at]

Description R102.2 /REP_DB=WormBase Gene ID /WP=CE23912 /TR=Q21888 /GB=CAA94356.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 14      6grp_total > 24      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2354
1 2 3 4 range
A 4824.3
(3)
P 		4597.2
(2.4)
P 		3515.8
(-0.7)
P 		2689.6
(-3)
P 		2135
B 5043.7
(3)
P 		3517.2
(-1.3)
P 		3284.8
(-1.9)
P 		2906.5
(-3)
P 		2137
C 4577.3
(3)
P 		3851.5
(0.6)
P 		3110.4
(-1.8)
P 		2744.7
(-3)
P 		1833
avr 4815.1
(3) 		3988.6
(0.6) 		3303.7
(-1.5) 		2780.3
(-3) 		2035

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3897
1 2 3 4 5 6 range
A 5160.6
(3)
P 		4271
(1.4)
P 		4238.1
(1.4)
P 		3239.7
(-0.4)
P 		1798.4
(-3)
P 		2021.2
(-2.6)
P 		3362
B 5695.7
(3)
P 		4732.9
(1.4)
P 		4522.5
(1.1)
P 		2467.7
(-2.3)
P 		2074.2
(-3)
P 		2524.2
(-2.3)
P 		3622
C 5273.5
(3)
P 		4480.6
(1.3)
P 		3398.1
(-1)
P 		2579.2
(-2.7)
P 		2426.8
(-3)
P 		2709.8
(-2.4)
P 		2847
avr 5376.6
(3) 		4494.8
(1.4) 		4052.9
(0.6) 		2762.2
(-1.8) 		2099.8
(-3) 		2418.4
(-2.4) 		3277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1363
1 2 3 4 range
A 1756.5
(3)
P 		997.9
(-0.3)
P 		919.1
(-0.7)
P 		393.7
(-3)
P 		1363
B 1608.4
(3)
P 		868.7
(-1.5)
P 		761.2
(-2.1)
P 		619.4
(-3)
P 		989
C 1515.2
(3)
P 		1107.3
(0.7)
P 		1084.1
(0.5)
P 		462.8
(-3)
P 		1052
avr 1626.7
(3) 		991.3
(-0.4) 		921.5
(-0.7) 		492
(-3) 		1135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1490
1 2 3 4 5 6 range
A 951.3
(-0.3)
P 		1519
(3)
P 		923
(-0.5)
P 		821.7
(-1.1)
P 		542.7
(-2.7)
P 		492.1
(-3)
P 		1027
B 1981.8
(3)
P 		1575.4
(1.2)
P 		1098.2
(-1)
P 		653.6
(-3)
P 		842.7
(-2.1)
P 		941.3
(-1.7)
P 		1328
C 1954.7
(3)
P 		1367.2
(0.5)
P 		864.9
(-1.6)
P 		518.7
(-3)
P 		785.3
(-1.9)
P 		907.1
(-1.4)
P 		1436
avr 1629.3
(3) 		1487.2
(2.1) 		962
(-1.2) 		664.7
(-3) 		723.6
(-2.6) 		780.2
(-2.3) 		965
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177365_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9547
Sequence Type Exemplar sequence
Representative Public ID R102.2 NCBI
Target Description R102.2 /REP_DB=WormBase Gene ID /WP=CE23912 /TR=Q21888 /GB=CAA94356.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069574 NCBI Caenorhabditis elegans R102.2 (R102.2) mRNA, complete cds. 11/11 None
SNAP00000034328 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10687620:10688046:1 11/11 None
GENEFINDER00000034347 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10687705:10688046:1 11/11 None
R102.2 ENSEMBL cdna:known chromosome:CEL140:IV:10687565:10688289:1 gene:R102.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001439 8/11 Cross Hyb Matching Probes None
GENEFINDER00000001473 8/11 Cross Hyb Matching Probes None
Y41E3.5 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10687678-10688052(+) 98.94 98.94
chrIV:15007773-15008141(+) 96.03 96.03
Public Domain and Genome References
Gene Title
Ensembl R102.2
Entrez Gene 177959 Entrez gene
SwissProt Q21888 EMBL-EBI
WormBase CE23912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94356 Hypothetical protein R102.2 [Caenorhabditis elegans] ref|NP_501975.1| R102.2 [Caenorhabditis elegans] 3.0E-60
blast CAA94356 Hypothetical protein R102.2 [Caenorhabditis elegans] ref|NP_501975.1| R102.2 [Caenorhabditis elegans] 7.0E-53
blast CAE60761 Hypothetical protein CBG04448 [Caenorhabditis briggsae] 2.0E-43
blast CAA94355 Hypothetical protein R102.1 [Caenorhabditis elegans] ref|NP_501974.1| R102.1 [Caenorhabditis elegans] 1.0E-38
Sequence
Target Sequence 
>C. ELEGANS:177365_AT
agaagttcgctgccaaggatgccgtcttcatcggaccactccacgatccatgcaccgctg
atgaggccgccaagttggctcaaagtgacaagatggctgctctcgtcaaggccgattttg
acgtcaagattgacgaagtcactcaaatcggagatgtcgtcgtcgagcgctgctccatca
gcgccaagttgccaactggcgacaagaacggatggtcactcaccgtctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTTCGCTGCCAAGGATGCCGT 30 75 92 Antisense
CCGCTGATGAGGCCGCCAAGTTGGC 400 263 146 Antisense
GCCAAGTTGGCTCAAAGTGACAAGA 686 277 160 Antisense
GCTCAAAGTGACAAGATGGCTGCTC 558 301 169 Antisense
TGCTCTCGTCAAGGCCGATTTTGAC 653 579 189 Antisense
GGCCGATTTTGACGTCAAGATTGAC 532 541 201 Antisense
GATTGACGAAGTCACTCAAATCGGA 282 435 219 Antisense
CACTCAAATCGGAGATGTCGTCGTC 143 195 231 Antisense
CCATCAGCGCCAAGTTGCCAACTGG 514 269 266 Antisense
TGCCAACTGGCGACAAGAACGGATG 300 587 281 Antisense
AGAACGGATGGTCACTCACCGTCTG 623 73 296 Antisense
Sequence Source Affymetrix Proprietary Database