[Home] | [Total List]

[177364_at]

Description R52.5 /REP_DB=WormBase Gene ID /WP=CE12832 /TR=O17290 /GB=AAB71061.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 14.9
(3)
A 		9.9
(-1.5)
A 		8.3
(-3)
A 		8.8
(-2.5)
A 		7
B 3.9
(-2.6)
A 		17.8
(0.9)
A 		2.5
(-3)
A 		25.8
(3)
A 		23
C 4.7
(-3)
A 		8.9
(-2.7)
A 		9.9
(-2.7)
A 		104.5
(3)
A 		100
avr 7.8
(-2.9) 		12.2
(-2.2) 		6.9
(-3) 		46.4
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 9.5
(1.5)
A 		11.8
(3)
A 		2.5
(-3)
A 		4.4
(-1.8)
A 		9.5
(1.5)
A 		6.2
(-0.6)
A 		9
B 20.4
(1.2)
A 		3
(-3)
A 		5.9
(-2.3)
A 		3
(-3)
A 		27.9
(3)
A 		5.4
(-2.4)
A 		25
C 1.8
(-3)
A 		39
(3)
A 		4.1
(-2.6)
A 		16.8
(-0.6)
A 		2
(-3)
A 		5.2
(-2.5)
A 		37
avr 10.6
(-0.2) 		17.9
(3) 		4.2
(-3) 		8.1
(-1.3) 		13.1
(0.9) 		5.6
(-2.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.4
(3)
A 		2.2
(-1.7)
A 		2.2
(-1.7)
A 		1.3
(-3)
A 		4
B 1.2
(-2.3)
A 		4.4
(1.7)
A 		0.6
(-3)
A 		5.5
(3)
A 		5
C 1.5
(-3)
A 		2.6
(-2.6)
A 		3.5
(-2.3)
A 		17.6
(3)
A 		16
avr 2.7
(-2.4) 		3.1
(-2) 		2.1
(-3) 		8.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.8
(-1)
A 		4.2
(3)
A 		0.6
(-3)
A 		1.1
(-2.2)
A 		2.9
(0.8)
A 		1.5
(-1.5)
A 		4
B 7.1
(0.6)
A 		1
(-2.9)
A 		1.4
(-2.7)
A 		0.8
(-3)
A 		11.3
(3)
A 		2
(-2.3)
A 		11
C 0.7
(-2.9)
A 		11.9
(3)
A 		1.1
(-2.7)
A 		3.4
(-1.5)
A 		0.6
(-3)
A 		1.7
(-2.4)
A 		11
avr 3.2
(-0.2) 		5.7
(3) 		1
(-3) 		1.8
(-2) 		4.9
(2) 		1.7
(-2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5252
Sequence Type Exemplar sequence
Representative Public ID R52.5 NCBI
Target Description R52.5 /REP_DB=WormBase Gene ID /WP=CE12832 /TR=O17290 /GB=AAB71061.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061783 NCBI Caenorhabditis elegans R52.5 (R52.5) mRNA, complete cds. 11/11 None
R52.5 ENSEMBL cdna:known chromosome:CEL140:II:2108788:2110044:-1 gene:R52.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034564 8/11 Cross Hyb Matching Probes None
GENEFINDER00000034578 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2108786-2110043(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R52.5
Entrez Gene 187879 Entrez gene
SwissProt O17290 EMBL-EBI
WormBase CE12832 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71061 Hypothetical protein R52.5 [Caenorhabditis elegans] ref|NP_494184.1| R52.5 [Caenorhabditis elegans] 1.0E-85
blast AAB37906 Hypothetical protein F07E5.7 [Caenorhabditis elegans] ref|NP_494171.1| F07E5.7 [Caenorhabditis elegans] 1.0E-32
blast AAB71063 Hypothetical protein R52.6 [Caenorhabditis elegans] ref|NP_494185.1| R52.6 [Caenorhabditis elegans] 2.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 2.8E-77
Sequence
Target Sequence 
>C. ELEGANS:177364_AT
ctttgtgcccaattattctatgttttgtgattactgtaacagaatgctgtatgaaaacta
ttccgccggatgatgtatctatttcaagcactctgccatatgaggagactacggaaatga
tgacaacaattgcaatggaaacatccaccatgacagaaaaagtttgtccaggcgatacca
cgtgtccagatctactagcttatggaggaggaatggagtttggtgaaatagacggatgca
ctgtgccagtgtgtagtgatggaaaagttgcatggatgatttttagaaatgtggattttg
aaatgaagttatatgatgggctaagtgatttgagtttagttttacccgttcctcctccga
cattggccggaatgggtggaaaaagttttgtggattattatggacttctttgtgaagaca
actcgtggaagatcacgaaatatcccttggggataaaggattatggcaatacgcaagcaa
ttctaggtgcagatggttcttatgacggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTGTGCCCAATTATTCTATGTTT 616 221 20 Antisense
GCTGTATGAAAACTATTCCGCCGGA 697 295 65 Antisense
TCCGCCGGATGATGTATCTATTTCA 25 597 81 Antisense
AAGTTTGTCCAGGCGATACCACGTG 137 157 179 Antisense
CACGTGTCCAGATCTACTAGCTTAT 334 199 198 Antisense
GAAATAGACGGATGCACTGTGCCAG 450 363 244 Antisense
CCTCCTCCGACATTGGCCGGAATGG 667 265 370 Antisense
GTGGATTATTATGGACTTCTTTGTG 394 489 409 Antisense
AGATCACGAAATATCCCTTGGGGAT 503 39 449 Antisense
GGCAATACGCAAGCAATTCTAGGTG 662 533 484 Antisense
AGGTGCAGATGGTTCTTATGACGGG 689 57 504 Antisense
Sequence Source Affymetrix Proprietary Database