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[177362_at]

Description R102.7 /REP_DB=WormBase Gene ID /WP=CE06335 /TR=Q21893 /GB=CAA94361.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 16      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 70.8
(-2.7)
A 		65.7
(-3)
A 		114.2
(-0.3)
A 		173.9
(3)
P 		108
B 61.6
(-3)
A 		84
(-1.2)
A 		91
(-0.6)
A 		134.9
(3)
P 		73
C 18.1
(-3)
A 		61.2
(-1)
A 		47.6
(-1.7)
A 		150.3
(3)
P 		132
avr 50.2
(-3) 		70.3
(-1.8) 		84.3
(-1) 		153
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 68.2
(-0.8)
A 		16.4
(-2.9)
A 		15.1
(-3)
A 		60.3
(-1.2)
A 		162.8
(3)
A 		149
(2.4)
P 		148
B 21.3
(-2.9)
A 		82.2
(-0.8)
A 		61.5
(-1.5)
A 		17.1
(-3)
A 		131.4
(0.9)
P 		194.9
(3)
P 		178
C 83.1
(-1.6)
A 		55.4
(-3)
A 		64.3
(-2.6)
A 		62.5
(-2.6)
A 		92.3
(-1.2)
P 		176.9
(3)
P 		122
avr 57.5
(-2.5) 		51.3
(-2.8) 		47
(-3) 		46.6
(-3) 		128.8
(0.9) 		173.6
(3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.8
(1.4)
A 		14.3
(-3)
A 		29.9
(3)
A 		25.5
(1.3)
P 		16
B 19.7
(-3)
A 		20.8
(-2.3)
A 		21.1
(-2.1)
A 		28.8
(3)
P 		9
C 6
(-3)
A 		17.6
(0.6)
A 		16.6
(0.3)
A 		25.3
(3)
P 		19
avr 17.2
(-3) 		17.6
(-2.7) 		22.5
(0.4) 		26.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 12.6
(-1.8)
A 		5.8
(-2.7)
A 		3.3
(-3)
A 		15.3
(-1.4)
A 		49.1
(3)
A 		36.3
(1.3)
P 		46
B 7.4
(-2.7)
A 		27.4
(-1)
A 		14.9
(-2.1)
A 		4.5
(-3)
A 		53.4
(1.3)
P 		72.7
(3)
P 		68
C 30.8
(-0.7)
A 		16.9
(-2.4)
A 		16.4
(-2.5)
A 		12.6
(-3)
A 		29.9
(-0.8)
P 		59.2
(3)
P 		47
avr 16.9
(-2.2) 		16.7
(-2.2) 		11.5
(-2.9) 		10.8
(-3) 		44.1
(1.4) 		56.1
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9099
Sequence Type Exemplar sequence
Representative Public ID R102.7 NCBI
Target Description R102.7 /REP_DB=WormBase Gene ID /WP=CE06335 /TR=Q21893 /GB=CAA94361.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028167 NCBI Caenorhabditis elegans R102.10 (R102.10) mRNA, complete cds. 11/11 None
SNAP00000034337 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10705607:10707226:1 11/11 None
GENEFINDER00000034344 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10703109:10707226:1 11/11 None
R102.10 ENSEMBL cdna:known chromosome:CEL140:IV:10705435:10707256:1 gene:R102.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10701963-10707232(+) 97.9 100.0
Public Domain and Genome References
Gene Title
Ensembl R102.10
Entrez Gene 3564803 Entrez gene
SwissProt Q6A4J7 EMBL-EBI
WormBase CE36710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10784 Hypothetical protein R102.10 [Caenorhabditis elegans] ref|NP_001023338.1| R102.10 [Caenorhabditis elegans] 1.0E-179
blast CAH10784 Hypothetical protein R102.10 [Caenorhabditis elegans] ref|NP_001023338.1| R102.10 [Caenorhabditis elegans] 1.0E-175
blast CAH10784 Hypothetical protein R102.10 [Caenorhabditis elegans] ref|NP_001023338.1| R102.10 [Caenorhabditis elegans] 1.0E-152
blast CAB07548 Hypothetical protein BE10.1 [Caenorhabditis elegans] ref|NP_499663.1| BE10.1 [Caenorhabditis elegans] 1.0E-132
blast CAB07548 Hypothetical protein BE10.1 [Caenorhabditis elegans] ref|NP_499663.1| BE10.1 [Caenorhabditis elegans] 1.0E-128
blast CAA94361 Hypothetical protein R102.7 [Caenorhabditis elegans] ref|NP_501983.2| R102.7 [Caenorhabditis elegans] 1.0E-116
blast CAB07548 Hypothetical protein BE10.1 [Caenorhabditis elegans] ref|NP_499663.1| BE10.1 [Caenorhabditis elegans] 1.0E-113
blast CAE57010 Hypothetical protein CBG24882 [Caenorhabditis briggsae] 2.0E-91
Protein Domains
Database ID Description E-Value
scop a.4.5.Replication terminator protein (RTP) All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Replication terminator protein (RTP) 7.69999980926514
Sequence
Target Sequence 
>C. ELEGANS:177362_AT
aactgatgagcccgtgcaattggtcaagaaaccgtcgtcaatgatgaaaattccaggaaa
agttcgttgtgatggcccatgtgctcaagttatcgaattggcggatacagttcaattcgg
atgtgatcatgtgatttgttcgggttgccgtaaaaaagcaacaagcactccacttttcga
tggttctcccggttgttgcaatgtaaattgtgttcaacttgcaaaggcaaatggggataa
agtttgcgctggacaatcgaactctgtcacctcgaacatttcgtatgtgggagcaatcga
atcaattgtgactcatgtttgcattctgaagaactacggtcatgatgtgctccgaactca
agtggaactggaatttccgtcttcagctcggttttctgttattatcagatgtttgtttca
ttacaaagatctgatgaagaactcccgtttctactacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGATGAGCCCGTGCAATTGGTC 651 139 1173 Antisense
AAAAGTTCGTTGTGATGGCCCATGT 164 121 1230 Antisense
TGGCCCATGTGCTCAAGTTATCGAA 407 545 1245 Antisense
CAAGCACTCCACTTTTCGATGGTTC 169 185 1334 Antisense
GTTCTCCCGGTTGTTGCAATGTAAA 304 289 1355 Antisense
GTTTGCGCTGGACAATCGAACTCTG 167 451 1414 Antisense
TCGAACTCTGTCACCTCGAACATTT 489 601 1429 Antisense
GTCATGATGTGCTCCGAACTCAAGT 435 467 1511 Antisense
GGAACTGGAATTTCCGTCTTCAGCT 658 529 1536 Antisense
GTCTTCAGCTCGGTTTTCTGTTATT 77 469 1551 Antisense
TGAAGAACTCCCGTTTCTACTACAG 44 573 1607 Antisense
Sequence Source Affymetrix Proprietary Database