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[177360_s_at]

Description M70.5 /REP_DB=WormBase Gene ID /WP=CE25961 /TR=O45188 /GB=AAC04438.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 19      6grp_total > 37      4grp_total > 28      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 122.5
(0.9)
P 		139.3
(2.3)
A 		75
(-3)
P 		147.3
(3)
P 		72
B 109.7
(2.8)
P 		111.3
(3)
A 		65.8
(-3)
P 		107.6
(2.5)
P 		46
C 133
(-0.7)
P 		112.3
(-3)
P 		113.2
(-2.9)
P 		165.3
(3)
P 		53
avr 121.7
(1) 		121
(0.9) 		84.7
(-3) 		140.1
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 148.1
(3)
P 		74.7
(-2.5)
A 		75.5
(-2.4)
A 		78.1
(-2.2)
A 		68
(-3)
A 		74.2
(-2.5)
P 		80
B 76.5
(1)
P 		82.2
(2.3)
P 		61.4
(-2.6)
A 		59.6
(-3)
A 		62.7
(-2.3)
A 		85.2
(3)
P 		26
C 96.2
(2.5)
P 		57.1
(-1)
A 		86.6
(1.6)
A 		71.7
(0.3)
A 		34.2
(-3)
A 		102.2
(3)
P 		68
avr 106.9
(3) 		71.3
(-1.1) 		74.5
(-0.7) 		69.8
(-1.3) 		55
(-3) 		87.2
(0.7) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 44.6
(3)
P 		30.2
(-0.5)
A 		19.6
(-3)
P 		21.6
(-2.5)
P 		25
B 35
(3)
P 		27.5
(0.7)
A 		15.3
(-3)
P 		22.9
(-0.7)
P 		20
C 44
(3)
P 		32.3
(-1.4)
P 		39.5
(1.3)
P 		27.9
(-3)
P 		16
avr 41.2
(3) 		30
(-0.9) 		24.8
(-2.8) 		24.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 27.3
(3)
P 		26.6
(2.6)
A 		16.4
(-3)
A 		19.8
(-1.1)
A 		20.5
(-0.7)
A 		18.1
(-2.1)
P 		11
B 26.6
(1.2)
P 		27.4
(1.4)
P 		14.9
(-3)
A 		15.8
(-2.7)
A 		25.5
(0.8)
A 		31.8
(3)
P 		17
C 35.7
(3)
P 		17.4
(-1.5)
A 		22
(-0.3)
A 		14.4
(-2.2)
A 		11.1
(-3)
A 		34.2
(2.6)
P 		25
avr 29.9
(3) 		23.8
(0.2) 		17.8
(-2.5) 		16.7
(-3) 		19
(-2) 		28
(2.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177360_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10957
Sequence Type Exemplar sequence
Representative Public ID M70.5 NCBI
Target Description M70.5 /REP_DB=WormBase Gene ID /WP=CE25961 /TR=O45188 /GB=AAC04438.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067783(11), NM_075672(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067783 NCBI Caenorhabditis elegans M70.5 (M70.5) mRNA, complete cds. 11/11 None
NM_075672 NCBI Caenorhabditis elegans Y73B3A.4 (Y73B3A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000022361 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:96342:104762:-1 11/11 None
M70.5 ENSEMBL cdna:known chromosome:CEL140:IV:2264375:2275608:-1 gene:M70.5 11/11 None
Y73B3A.4 ENSEMBL cdna:known chromosome:CEL140:X:96342:104762:-1 gene:Y73B3A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022305 1/11 Cross Hyb Matching Probes None
SNAP00000022306 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:96341-104762(-) 96.14 96.14
chrIV:2264970-2275614(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl M70.5
Y73B3A.4
Entrez Gene 187469 Entrez gene
190622 Entrez gene
SwissProt O45188 EMBL-EBI
Q95XE9 EMBL-EBI
WormBase CE25961 Wormbase
CE26591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04438 Hypothetical protein M70.5 [Caenorhabditis elegans] ref|NP_500184.1| M70.5 [Caenorhabditis elegans] 0.0
blast AAK39358 Hypothetical protein Y73B3A.4 [Caenorhabditis elegans] ref|NP_508073.1| Y73B3A.4 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177360_S_AT
ctcgggaacctctttgccgagctttatcgccacatctggtgatactgtagtgattactga
tttgggtaaacaacagacagttattcttatacgacttgacgattcgaaatggaaagatgt
gaagattgagattattcgagtcatttcagcgactggaatcaatttgtcagccgagcacat
tctcaacactcaatattttacctacgtcgccggagcacaaattgatcagaatggaaatgt
cattattgcagacgcgaagaatcatcatttcaagcttttcgagccgtcgttgggcttcat
acaccgcgtctccacggatttccctgttccatacgtttcctcgtttcatgtcaatcaccg
cggagagtgtctgattctatcgatacgagatacacagaaggttcactttgctcggctctc
ttccacaaaccgcctggagccacacatcaaatctggagccggaaaacgtcaaggagtcac
aaatccgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGGGAACCTCTTTGCCGAGCTTT 12 223 1227 Antisense
GCTTTATCGCCACATCTGGTGATAC 356 305 1247 Antisense
CAATTTGTCAGCCGAGCACATTCTC 260 181 1386 Antisense
ACACTCAATATTTTACCTACGTCGC 465 107 1412 Antisense
CCTACGTCGCCGGAGCACAAATTGA 245 269 1427 Antisense
ATCATTTCAAGCTTTTCGAGCCGTC 192 29 1490 Antisense
TTCGAGCCGTCGTTGGGCTTCATAC 678 695 1504 Antisense
ACCGCGGAGAGTGTCTGATTCTATC 105 89 1583 Antisense
CACAGAAGGTTCACTTTGCTCGGCT 344 193 1619 Antisense
GGAGCCACACATCAAATCTGGAGCC 28 523 1662 Antisense
ACGTCAAGGAGTCACAAATCCGCTC 598 61 1692 Antisense
Sequence Source Affymetrix Proprietary Database