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[177359_at]

Description Y97E10AM.A /REP_DB=WormBase Gene ID /WP=CE25640 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60909.1
Cluster 6grp_total > 95      4grp_total > 14      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 30.3
(3)
P 		4.5
(-2.5)
A 		2.1
(-3)
A 		26.8
(2.3)
A 		28
B 18.1
(3)
A 		4.2
(-2.3)
A 		2.4
(-3)
A 		2.4
(-3)
A 		16
C 1.8
(-3)
A 		10.1
(-1.2)
A 		13.2
(-0.6)
A 		30
(3)
A 		28
avr 16.7
(1.7) 		6.3
(-2.8) 		5.9
(-3) 		19.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 6.8
(-2.3)
A 		11.1
(-1.4)
A 		3.7
(-3)
A 		23.7
(1.4)
A 		29.5
(2.6)
A 		31.1
(3)
P 		27
B 16.4
(-0.5)
A 		16.5
(-0.5)
P 		35.6
(3)
P 		9.4
(-1.8)
A 		17.8
(-0.3)
A 		2.8
(-3)
A 		33
C 25.9
(2.5)
A 		12.7
(-0.5)
A 		2
(-3)
A 		28.1
(3)
A 		11.6
(-0.8)
A 		19.5
(1)
A 		26
avr 16.4
(-0.4) 		13.4
(-3) 		13.8
(-2.7) 		20.4
(3) 		19.6
(2.3) 		17.8
(0.8) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11
(3)
P 		1
(-2.7)
A 		0.5
(-3)
A 		3.9
(-1.1)
A 		11
B 5.8
(3)
A 		1
(-2.4)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		5
C 0.6
(-3)
A 		2.9
(0.1)
A 		4.6
(2.3)
A 		5.1
(3)
A 		5
avr 5.8
(3) 		1.6
(-3) 		1.9
(-2.6) 		3.2
(-0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.3
(-2.6)
A 		3.9
(-0.7)
A 		0.8
(-3)
A 		6
(0.9)
A 		8.9
(3)
A 		7.6
(2)
P 		8
B 5.7
(0.7)
A 		5.5
(0.6)
P 		8.6
(3)
P 		2.5
(-1.8)
A 		7.2
(1.9)
A 		1
(-3)
A 		8
C 9.6
(3)
A 		3.9
(-0.8)
A 		0.5
(-3)
A 		5.7
(0.4)
A 		3.8
(-0.8)
A 		6.5
(1)
A 		9
avr 5.5
(1) 		4.4
(-1) 		3.3
(-3) 		4.7
(-0.5) 		6.6
(3) 		5
(0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19398
Sequence Type Exemplar sequence
Representative Public ID Y97E10AM.A NCBI
Target Description Y97E10AM.A /REP_DB=WormBase Gene ID /WP=CE25640 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60909.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072655 NCBI Caenorhabditis elegans Y97E10AM.1 (Y97E10AM.1) mRNA, complete cds. 11/11 None
GENEFINDER00000022453 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7995927:7997257:-1 11/11 None
Y97E10AM.1 ENSEMBL cdna:known chromosome:CEL140:V:7996741:7997257:-1 gene:Y97E10AM.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7996741-7997258(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AM.1
Entrez Gene 190815 Entrez gene
SwissProt Q9N2V1 EMBL-EBI
WormBase CE25640 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60909 Hypothetical protein Y97E10AM.1 [Caenorhabditis elegans] ref|NP_505056.1| Y97E10AM.1 [Caenorhabditis elegans] 3.0E-66
blast AAF60909 Hypothetical protein Y97E10AM.1 [Caenorhabditis elegans] ref|NP_505056.1| Y97E10AM.1 [Caenorhabditis elegans] 1.0E-65
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.109999999403954
Pfam IPR001356 EMBL-EBI Homeobox 0.01
Sequence
Target Sequence 
>C. ELEGANS:177359_AT
gtcttccagctatacaatttctacaataccgtatcttcaattgcctaacaatttcagtag
gtttgatttacaaaactctacattcagttatgatcccataaaatattgtaaactggattt
tgacgtggagaagtcgctaagatcatttaatcagctgcctgtattaagtccaacttttac
acaatgctattttcaagttcttcctacggttaacgatagaaagatcaagatggaacaaca
tttgcctagaaggagaactaccagagagtttgaaattgatgtagacttttataaaacgaa
atcatcagaattgttaaatcctcttgagccttctcttcattttcttgcacctaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTCCAGCTATACAATTTCTACA 232 469 15 Antisense
ATACCGTATCTTCAATTGCCTAACA 403 23 40 Antisense
ACTCTACATTCAGTTATGATCCCAT 246 101 89 Antisense
CGTGGAGAAGTCGCTAAGATCATTT 233 243 138 Antisense
AAGATCATTTAATCAGCTGCCTGTA 669 153 153 Antisense
TCAGCTGCCTGTATTAAGTCCAACT 255 625 165 Antisense
AAGTCCAACTTTTACACAATGCTAT 225 159 180 Antisense
CAATGCTATTTTCAAGTTCTTCCTA 578 181 196 Antisense
TCAAGTTCTTCCTACGGTTAACGAT 389 629 207 Antisense
TGTTAAATCCTCTTGAGCCTTCTCT 414 561 326 Antisense
TCTCTTCATTTTCTTGCACCTAAAG 312 613 346 Antisense
Sequence Source Affymetrix Proprietary Database