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[177358_at]

Description Y39G10AL.B /REP_DB=WormBase Gene ID /WP=CE25267 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59489.1
Cluster 4grp_highest_8_8 > 56      4grp_high_8_8 > 27      6grp_total > 12      4grp_total > 37      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 110.4
(-1.1)
P 		92.6
(-3)
P 		127.9
(0.8)
P 		148.4
(3)
P 		56
B 119
(2.9)
P 		119.7
(3)
P 		74.3
(-3)
P 		74.8
(-2.9)
P 		45
C 126.8
(1.9)
P 		139.9
(3)
P 		70
(-3)
P 		89.5
(-1.3)
P 		70
avr 118.7
(3) 		117.4
(2.7) 		90.7
(-3) 		104.2
(-0.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 85.5
(0.4)
A 		104.5
(3)
P 		61.4
(-3)
P 		82.2
(-0.1)
A 		72.2
(-1.5)
P 		72.5
(-1.5)
P 		43
B 91.4
(3)
P 		88.9
(2.6)
P 		83.2
(1.5)
P 		57.8
(-3)
A 		61.8
(-2.3)
P 		60
(-2.6)
P 		34
C 68.1
(-1.6)
P 		115.2
(3)
P 		96
(1.1)
P 		55.4
(-2.8)
A 		55.2
(-2.9)
P 		53.7
(-3)
A 		62
avr 81.7
(-0.1) 		102.9
(3) 		80.2
(-0.3) 		65.1
(-2.6) 		63.1
(-2.9) 		62.1
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 40.2
(3)
P 		20.1
(-3)
P 		33.4
(1)
P 		21.7
(-2.5)
P 		20
B 38
(3)
P 		29.6
(0.7)
P 		17.2
(-2.6)
P 		15.9
(-3)
P 		22
C 42
(3)
P 		40.2
(2.6)
P 		24.4
(-0.9)
P 		15.1
(-3)
P 		27
avr 40.1
(3) 		30
(0.3) 		25
(-1) 		17.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 15.8
(-2.4)
A 		37.2
(3)
P 		13.4
(-3)
P 		20.9
(-1.1)
A 		21.8
(-0.9)
P 		17.7
(-1.9)
P 		24
B 31.8
(3)
P 		29.6
(2.2)
P 		20.2
(-1.2)
P 		15.3
(-3)
A 		25.1
(0.6)
P 		22.4
(-0.4)
P 		17
C 25.3
(0.5)
P 		35.2
(3)
P 		24.4
(0.3)
P 		11.1
(-3)
A 		17.9
(-1.3)
P 		18
(-1.3)
A 		24
avr 24.3
(-0.2) 		34
(3) 		19.3
(-1.8) 		15.8
(-3) 		21.6
(-1.1) 		19.4
(-1.8) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18736
Sequence Type Exemplar sequence
Representative Public ID Y39G10AL.B NCBI
Target Description Y39G10AL.B /REP_DB=WormBase Gene ID /WP=CE25267 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59489.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058549 NCBI Caenorhabditis elegans Y39G10AL.2 (Y39G10AL.2) mRNA, complete cds. 11/11 None
GENEFINDER00000021544 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2268779:2272867:-1 11/11 None
SNAP00000021529 ENSEMBL cdna:SNAP chromosome:CEL140:I:2268805:2272867:-1 11/11 None
Y39G10AL.2 ENSEMBL cdna:known chromosome:CEL140:I:2268779:2272867:-1 gene:Y39G10AL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2268778-2272867(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39G10AL.2
Entrez Gene 189766 Entrez gene
SwissProt Q9N403 EMBL-EBI
WormBase CE25267 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59489 Hypothetical protein Y39G10AL.2 [Caenorhabditis elegans] ref|NP_490950.1| Y39G10AL.2 [Caenorhabditis elegans] 0.0
blast CAE60304 Hypothetical protein CBG03891 [Caenorhabditis briggsae] 0.0
blast AAH57853 ATP-binding cassette, sub-family A, member 4 [Mus musculus] ref|NP_031404.1| ATP-binding cassette, sub-family A, member 4 [Mus musculus] sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter (ATP-binding cassette sub-family A member 4) (RIM ABC transporter) (RIM protein) (RmP) gb|AAC23916.1| ATP-binding cassette transporter [Mus musculus] 7.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490950.1 1 61-80
Y39G10AL.2 1 61-80
GENEFINDER00000021544 1 61-80
SNAP00000021529 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:177358_AT
acatgtacacctgtgccacatcatcaggacatgaactgctcgagcttggagagcccgatt
ttgatgaaagttcgggaggccctttctgggtatattcttgtgacaccggataatccggtg
actcggcgtgtggttgataggctcaacatccccctccgagacatcgaacacctccggaac
ctgctgtacacctatccatcggacgccttagagtttcaagaccgtcttcacgcttcggac
ctctggccggcgagtcagaaactgctccatttcatcaaggtctacaaaaacgggcaaaac
cagctcaacacacggactattcacttttttttggagcatctatttgctccatccagtgat
gagtacagcttcggaacctacaccaaaaatatcacggaaattgcgaataagtacaccggt
tgctttttgttggacagatttcgatttgtaaccgatgagaaggagctggagacgaacgcg
gtgtgtcttatggacactcaccaatatttcacgggaatcgtgttcaatatcgattcgaat
gcgaccgaattcgacgggttcaccacttata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGTACACCTGTGCCACATCATC 447 107 1195 Antisense
TTCGGGAGGCCCTTTCTGGGTATAT 583 691 1265 Antisense
TAATCCGGTGACTCGGCGTGTGGTT 439 605 1305 Antisense
TCCATCGGACGCCTTAGAGTTTCAA 539 589 1389 Antisense
TGGCCGGCGAGTCAGAAACTGCTCC 623 541 1438 Antisense
TGCTCCATTTCATCAAGGTCTACAA 585 581 1457 Antisense
AGCTCAACACACGGACTATTCACTT 256 79 1496 Antisense
AGCATCTATTTGCTCCATCCAGTGA 68 79 1529 Antisense
TGAGTACAGCTTCGGAACCTACACC 185 569 1554 Antisense
GGACACTCACCAATATTTCACGGGA 205 527 1686 Antisense
GAATTCGACGGGTTCACCACTTATA 582 175 1741 Antisense
Sequence Source Affymetrix Proprietary Database