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[177356_at]

Description 6R55.2 /REP_DB=WormBase Gene ID /WP=CE19653 /TR=Q9XXA6 /GB=CAA20210.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.7
(-2.1)
A 		8.6
(-3)
A 		9.3
(-2.7)
A 		22.5
(3)
A 		14
B 23.3
(3)
A 		9.8
(-1.6)
A 		5.5
(-3)
A 		6.8
(-2.6)
A 		18
C 7.1
(-3)
A 		9
(-2.1)
A 		7.5
(-2.8)
A 		19.2
(3)
A 		12
avr 13.7
(1.3) 		9.1
(-1.8) 		7.4
(-3) 		16.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.6
(-2)
A 		5.2
(-2.4)
A 		31.7
(3)
A 		10
(-1.5)
A 		2.5
(-3)
A 		3.7
(-2.8)
A 		29
B 6
(0.6)
A 		7.3
(3)
A 		4.4
(-2.3)
A 		4
(-3)
A 		4.9
(-1.4)
A 		5.8
(0.3)
A 		3
C 8.9
(0.1)
A 		13.6
(3)
A 		8.9
(0.1)
A 		4.8
(-2.5)
A 		9.7
(0.6)
A 		4
(-3)
A 		10
avr 7.5
(-1.3) 		8.7
(-0.6) 		15
(3) 		6.3
(-2) 		5.7
(-2.3) 		4.5
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.9
(3)
A 		1.9
(-3)
A 		2.4
(-1.5)
A 		3.3
(1.2)
A 		2
B 7.4
(3)
A 		2.4
(-1.9)
A 		1.3
(-3)
A 		1.5
(-2.8)
A 		6
C 2.4
(-3)
A 		2.6
(-1.5)
A 		2.6
(-1.5)
A 		3.2
(3)
A 		1
avr 4.6
(3) 		2.3
(-2.5) 		2.1
(-3) 		2.7
(-1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.4
(-2.3)
A 		1.9
(-1.8)
A 		6.9
(3)
A 		2.5
(-1.3)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		6
B 2.1
(1.6)
A 		2.4
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2
(1.2)
A 		2.2
(2.1)
A 		1
C 3.3
(1.5)
A 		4.1
(3)
A 		2.3
(-0.5)
A 		1
(-3)
A 		3.2
(1.3)
A 		1.3
(-2.4)
A 		3
avr 2.3
(-0.5) 		2.8
(1.1) 		3.4
(3) 		1.5
(-3) 		2
(-1.4) 		1.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17967
Sequence Type Exemplar sequence
Representative Public ID 6R55.2 NCBI
Target Description 6R55.2 /REP_DB=WormBase Gene ID /WP=CE19653 /TR=Q9XXA6 /GB=CAA20210.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078462 NCBI Caenorhabditis elegans 6R55.2 (6R55.2) mRNA, complete cds. 11/11 None
6R55.2 ENSEMBL cdna:known chromosome:CEL140:X:17712782:17714740:1 gene:6R55.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010177 2/11 Cross Hyb Matching Probes None
SNAP00000010165 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17714363-17714739(+) 61.26 66.44
Public Domain and Genome References
Gene Title
Ensembl 6R55.2
Entrez Gene 181798 Entrez gene
SwissProt Q9XXA6 EMBL-EBI
WormBase CE19653 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20210 Hypothetical protein 6R55.2 [Caenorhabditis elegans] ref|NP_510863.1| 6R55.2 [Caenorhabditis elegans] 1.0E-60
Sequence
Target Sequence 
>C. ELEGANS:177356_AT
gtcgctggggagtcagacccaacgggtgagaacggcgaaatgtgtgttcgcgcggaggac
acggagcttggacgagcggcggatgacgatgagcggtgcagagggaataacagtacacat
ttagataaatccaaccataactccccaatcacatctcactttctcaaacgtgatgctaca
ctctacctctcaactgactacactgtaaccaattggaagggggacggcagtccactgtct
ttctcgcgagtcgataaagaatacacatacacacacacacacacattatcgcacactacc
tcactctcaatcttttttttgacgttcagttctgtttcatcattcgttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCTGGGGAGTCAGACCCAACGG 393 473 28 Antisense
AATGTGTGTTCGCGCGGAGGACACG 635 163 66 Antisense
AGGACACGGAGCTTGGACGAGCGGC 690 53 83 Antisense
GCGGCGGATGACGATGAGCGGTGCA 557 293 103 Antisense
AGATAAATCCAACCATAACTCCCCA 643 65 150 Antisense
ATCACATCTCACTTTCTCAAACGTG 699 27 175 Antisense
AAACGTGATGCTACACTCTACCTCT 478 127 193 Antisense
CCTCTCAACTGACTACACTGTAACC 574 267 213 Antisense
GGAAGGGGGACGGCAGTCCACTGTC 695 523 242 Antisense
ACTGTCTTTCTCGCGAGTCGATAAA 620 97 261 Antisense
CAGTTCTGTTTCATCATTCGTTCAC 342 207 354 Antisense
Sequence Source Affymetrix Proprietary Database