[Home] | [Total List]

[177355_at]

Description M142.5 /REP_DB=WormBase Gene ID /WP=CE06206 /TR=Q21541 /GB=CAA97808.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 95      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 72      6grp_total > 75      4grp_total > 09      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 477
1 2 3 4 range
A 439.3
(-3)
P 		519.9
(-1.9)
P 		461
(-2.7)
P 		890.9
(3)
P 		452
B 477.5
(-3)
P 		501.5
(-2.3)
P 		610.9
(0.8)
P 		686.5
(3)
P 		209
C 414
(-3)
P 		458.3
(-2.3)
P 		476.9
(-2)
P 		807.1
(3)
P 		393
avr 443.6
(-3) 		493.2
(-2.2) 		516.3
(-1.8) 		794.8
(3) 		351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 338.9
(-2.3)
P 		313.2
(-3)
P 		428.5
(0.1)
P 		522.9
(2.6)
P 		367.8
(-1.5)
P 		536.6
(3)
P 		223
B 353.5
(-2.6)
P 		340.8
(-3)
P 		420.4
(-0.4)
P 		371
(-2)
P 		411.6
(-0.7)
P 		521.9
(3)
P 		181
C 422.2
(-0.8)
P 		332.8
(-3)
P 		363.5
(-2.2)
P 		543.2
(2.2)
P 		440.8
(-0.3)
P 		573.8
(3)
P 		241
avr 371.5
(-1.8) 		328.9
(-3) 		404.1
(-0.9) 		479
(1.2) 		406.7
(-0.8) 		544.1
(3) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 159.9
(3)
P 		112.9
(-3)
P 		120.5
(-2)
P 		130.4
(-0.8)
P 		47
B 152.3
(3)
P 		123.9
(-3)
P 		141.6
(0.7)
P 		146.3
(1.7)
P 		28
C 137
(-2.1)
P 		131.8
(-3)
P 		166.2
(3)
P 		136.1
(-2.3)
P 		34
avr 149.7
(3) 		122.9
(-3) 		142.8
(1.5) 		137.6
(0.3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 62.5
(-3)
P 		111.4
(1.2)
P 		93.3
(-0.4)
P 		132.6
(3)
P 		111
(1.2)
P 		130.6
(2.8)
P 		70
B 123
(-1.5)
P 		113.5
(-2.1)
P 		102.1
(-2.8)
P 		98.3
(-3)
P 		167.2
(1.3)
P 		194.6
(3)
P 		96
C 156.5
(0.9)
P 		101.5
(-2.5)
P 		92.5
(-3)
P 		109.2
(-2)
P 		142.6
(0)
P 		192.1
(3)
P 		100
avr 114
(-1.6) 		108.8
(-2) 		96
(-3) 		113.4
(-1.6) 		140.3
(0.5) 		172.4
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7120
Sequence Type Exemplar sequence
Representative Public ID M142.5 NCBI
Target Description M142.5 /REP_DB=WormBase Gene ID /WP=CE06206 /TR=Q21541 /GB=CAA97808.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027523 NCBI Caenorhabditis elegans M142.8 (M142.8) mRNA, complete cds. 11/11 None
GENEFINDER00000000579 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10931086:10935879:1 11/11 None
M142.8 ENSEMBL cdna:known chromosome:CEL140:III:10933506:10936001:1 gene:M142.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10931081-10935875(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M142.8
Entrez Gene 176524 Entrez gene
SwissProt Q5WRN3 EMBL-EBI
WormBase CE37540 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251537_AT expressed protein at
CANINE_2:CFAAFFX.11723.1.S1_AT similar to M142.8 cfa
DROSOPHILA_2:1627459_AT dm
DROSGENOME1:153175_AT dm
CHICKEN:GGA.1623.1.S1_AT similar to RIKEN cDNA 2510005D08 gga
CHICKEN:GGAAFFX.12101.1.S1_S_AT similar to RIKEN cDNA 2510005D08 gga
HU35KSUBC:RC_W81320_AT hypothetical protein LOC221143 hs
U133_X3P:HS.57844.0.A1_3P_AT hypothetical protein LOC221143 hs
HG-U133_PLUS_2:227054_AT hypothetical protein LOC221143 hs
HG-U133B:227054_AT hypothetical protein LOC221143 hs
HG-U95B:53167_AT hypothetical protein LOC221143 hs
HG-U95B:48882_AT Hypothetical protein LOC221143 hs
HU35KSUBB:RC_R59593_AT Hypothetical protein LOC221143 hs
MG-U74AV2:100073_AT RIKEN cDNA 2510005D08 gene mm
MOE430A:1435269_AT RIKEN cDNA 2510005D08 gene mm
MOUSE430_2:1435269_AT RIKEN cDNA 2510005D08 gene mm
MOUSE430A_2:1435269_AT RIKEN cDNA 2510005D08 gene mm
MOE430A:1435270_X_AT RIKEN cDNA 2510005D08 gene mm
MOUSE430A_2:1435270_X_AT RIKEN cDNA 2510005D08 gene mm
MOUSE430_2:1435270_X_AT RIKEN cDNA 2510005D08 gene mm
MG-U74BV2:165058_F_AT RIKEN cDNA 2510005D08 gene mm
MOE430A:1449072_A_AT RIKEN cDNA 2510005D08 gene mm
MOUSE430A_2:1449072_A_AT RIKEN cDNA 2510005D08 gene mm
MOUSE430_2:1449072_A_AT RIKEN cDNA 2510005D08 gene mm
MOE430A:1418386_AT RIKEN cDNA 2510005D08 gene mm
MOUSE430A_2:1418386_AT RIKEN cDNA 2510005D08 gene mm
MOUSE430_2:1418386_AT RIKEN cDNA 2510005D08 gene mm
MU19KSUBA:TC22869_AT RIKEN cDNA 2510005D08 gene (2510005D08Rik), mRNA mm
RG-U34C:RC_AI234679_AT similar to RIKEN cDNA 2510005D08 (predicted) rn
RAE230A:1390098_AT similar to RIKEN cDNA 2510005D08 (predicted) rn
RAT230_2:1390098_AT similar to RIKEN cDNA 2510005D08 (predicted) rn
RG-U34B:RC_AI045021_AT Similar to RIKEN cDNA 2510005D08 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6306 DNA methylation inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8170 N-methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAH60777 Hypothetical protein M142.8 [Caenorhabditis elegans] ref|NP_001022694.1| M142.8 [Caenorhabditis elegans] 1.0E-123
blast CAH60777 Hypothetical protein M142.8 [Caenorhabditis elegans] ref|NP_001022694.1| M142.8 [Caenorhabditis elegans] 1.0E-122
blast CAA97808 Hypothetical protein M142.5 [Caenorhabditis elegans] ref|NP_499402.2| M142.5 [Caenorhabditis elegans] 1.0E-112
blast CAE71370 Hypothetical protein CBG18274 [Caenorhabditis briggsae] 8.0E-86
blast CAE71370 Hypothetical protein CBG18274 [Caenorhabditis briggsae] 2.0E-85
blast XP_509564 PREDICTED: hypothetical protein XP_509564 [Pan troglodytes] 1.0E-44
Sequence
Target Sequence 
>C. ELEGANS:177355_AT
gaaacttgtcgctgaaggtgtcgccgcagcgttggaaggatccgaagcaaggcctgcaag
gatcggatgtgtctcttcgcccacactcgtcaagtttttccatgaaactgaggaatacaa
aaccggtcaaattcaactgacacttttcgagttcgacgaccgtttcggcttgaaatttcc
aacggaattcgtccactacgactacaaacatccgacagatcttccagctgaacttctcgc
aaaattcgatgtaattatagctgatccaccgtttttggcagccgaatgtctcatcaaaac
ggcccattcaattcgattactcggaaaatctgatgtgaaggttttgctgtgtactggagc
tattatggaggactatgcatcacggctcatggcaatgcaccgaacgagttttgagccacg
gcatgctaacaatcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTTGTCGCTGAAGGTGTCGCC 376 355 825 Antisense
GTGTCGCCGCAGCGTTGGAAGGATC 411 485 842 Antisense
GCAAGGATCGGATGTGTCTCTTCGC 550 321 880 Antisense
TTCGACGACCGTTTCGGCTTGAAAT 431 693 976 Antisense
CAAACATCCGACAGATCTTCCAGCT 631 191 1029 Antisense
TCTTCCAGCTGAACTTCTCGCAAAA 515 617 1044 Antisense
ATAGCTGATCCACCGTTTTTGGCAG 98 23 1081 Antisense
TTTTTGGCAGCCGAATGTCTCATCA 153 675 1096 Antisense
GTCTCATCAAAACGGCCCATTCAAT 283 465 1112 Antisense
GACTATGCATCACGGCTCATGGCAA 650 371 1195 Antisense
GAGCCACGGCATGCTAACAATCTTG 455 385 1237 Antisense
Sequence Source Affymetrix Proprietary Database