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[177354_at]

Description CD4.5 /REP_DB=WormBase Gene ID /WP=CE16953 /TR=O44157 /GB=AAB88343.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 69
(1.3)
A 		53.3
(-3)
A 		75.3
(3)
A 		71.4
(1.9)
A 		22
B 88.5
(3)
A 		86.7
(2.3)
A 		87.9
(2.8)
A 		72.9
(-3)
A 		16
C 78.6
(-2.3)
A 		99
(0.7)
A 		74.1
(-3)
A 		114.8
(3)
A 		41
avr 78.7
(-3) 		79.7
(-2.2) 		79.1
(-2.7) 		86.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 101.7
(1.9)
A 		85.9
(0.4)
A 		76.2
(-0.5)
A 		49.9
(-3)
A 		113.2
(3)
A 		67.2
(-1.4)
A 		63
B 77.4
(1.6)
A 		87.5
(3)
A 		49.9
(-2.2)
A 		62
(-0.6)
A 		65.6
(-0.1)
A 		44.5
(-3)
A 		43
C 92.9
(-0.4)
A 		147
(3)
A 		91.8
(-0.5)
A 		66.5
(-2.1)
A 		67.2
(-2.1)
A 		52.5
(-3)
A 		95
avr 90.7
(1.1) 		106.8
(3) 		72.6
(-0.9) 		59.5
(-2.4) 		82
(0.1) 		54.7
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 25.1
(3)
A 		11.6
(-2.5)
A 		19.7
(0.8)
A 		10.4
(-3)
A 		15
B 28.2
(3)
A 		21.4
(-0.2)
A 		20.4
(-0.7)
A 		15.5
(-3)
A 		13
C 26
(1.4)
A 		28.5
(3)
A 		25.8
(1.2)
A 		19.4
(-3)
A 		9
avr 26.4
(3) 		20.5
(-0.1) 		22
(0.7) 		15.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 18.8
(-1.3)
A 		30.6
(2)
A 		16.6
(-1.9)
A 		12.6
(-3)
A 		34.2
(3)
A 		16.4
(-1.9)
A 		22
B 26.9
(2.2)
A 		29.1
(3)
A 		12.1
(-3)
A 		16.4
(-1.5)
A 		26.7
(2.2)
A 		16.6
(-1.4)
A 		17
C 34.4
(1)
A 		44.9
(3)
A 		23.4
(-1.1)
A 		13.4
(-3)
A 		21.8
(-1.4)
A 		17.6
(-2.2)
A 		32
avr 26.7
(0.6) 		34.9
(3) 		17.4
(-2) 		14.1
(-3) 		27.6
(0.9) 		16.9
(-2.2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12130
Sequence Type Exemplar sequence
Representative Public ID CD4.5 NCBI
Target Description CD4.5 /REP_DB=WormBase Gene ID /WP=CE16953 /TR=O44157 /GB=AAB88343.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072072(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072072 NCBI Caenorhabditis elegans CD4.5 (CD4.5) mRNA, complete cds. 9/11 None
SNAP00000006230 ENSEMBL cdna:SNAP chromosome:CEL140:V:5591697:5594198:1 9/11 None
GENEFINDER00000006244 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5588049:5594377:1 11/11 None
CD4.5 ENSEMBL cdna:known chromosome:CEL140:V:5592247:5594433:1 gene:CD4.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5591160-5594433(+) 95.51 100.0
Public Domain and Genome References
Gene Title
Ensembl CD4.5
Entrez Gene 183877 Entrez gene
SwissProt O44157 EMBL-EBI
WormBase CE36811 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504473 CD4.5 [Caenorhabditis elegans] gb|AAB88343.3| Hypothetical protein CD4.5 [Caenorhabditis elegans] 0.0
blast CAE64608 Hypothetical protein CBG09364 [Caenorhabditis briggsae] 1.0E-177
blast CAE64608 Hypothetical protein CBG09364 [Caenorhabditis briggsae] 1.0E-122
blast AAY86261 Hypothetical protein CD4.11 [Caenorhabditis elegans] 1.0E-75
blast CAA98544 Hypothetical protein T19B10.9 [Caenorhabditis elegans] ref|NP_505857.1| T19B10.9 [Caenorhabditis elegans] 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:177354_AT
cctctacagcttcttctatcttagagtcatctcaagtaaacgtaaaagagctctcgtcct
gctcagcactgacttgcactttcaacgacggagattcgtgcttttttggattaagtggag
ttggcagcactgctgcatggagtctcagtgatcgtctcgttggaaatagacatacaggaa
ttcagagagttaacctagatgatcaatctaaaattgggtttgcatatgtcggcagtgatt
ccaaatctgaatcggagaatatatttgtcgccgaatcgccgaaattctctctttctcatg
atagttacttgatatttgatgtctacatacgttcggtttctccaaaactcaaggtatgca
tcgataattttgaaaactgtccctacaattcgccacaactacgaaaagatgcgttttgga
gaggcgaacagaaattgattttgaaggaaggatctagaaagatatttttcgttgctgaaa
acgtcaagaagcatcaatttctggcaattgataatatcagattggaaggcaaagacggag
ccagtctcgacacggcaggtgtttgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTACAGCTTCTTCTATCTTAGA 79 269 524 Antisense
AACGTAAAAGAGCTCTCGTCCTGCT 119 143 562 Antisense
CACTGACTTGCACTTTCAACGACGG 162 199 590 Antisense
GGCAGCACTGCTGCATGGAGTCTCA 313 535 646 Antisense
AGTCTCAGTGATCGTCTCGTTGGAA 403 61 664 Antisense
TATTTGTCGCCGAATCGCCGAAATT 702 659 785 Antisense
AAATTCTCTCTTTCTCATGATAGTT 688 115 805 Antisense
GTCTACATACGTTCGGTTTCTCCAA 638 469 844 Antisense
TGAAAACTGTCCCTACAATTCGCCA 349 573 894 Antisense
GCAAAGACGGAGCCAGTCTCGACAC 413 317 1052 Antisense
GTCTCGACACGGCAGGTGTTTGTGA 10 469 1067 Antisense
Sequence Source Affymetrix Proprietary Database