[Home] | [Total List]

[177351_at]

Description R102.3 /REP_DB=WormBase Gene ID /WP=CE06331 /TR=Q21889 /GB=CAA94357.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 50.4
(-0.2)
A 		5.6
(-3)
A 		45.8
(-0.5)
A 		103.3
(3)
A 		98
B 9.1
(-3)
A 		9.1
(-3)
A 		21.4
(-1.4)
A 		54.9
(3)
A 		46
C 30.5
(3)
A 		15.5
(-0.6)
A 		5.5
(-3)
A 		14.5
(-0.8)
A 		25
avr 30
(-0.5) 		10.1
(-3) 		24.2
(-1.2) 		57.6
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 7.4
(-3)
A 		27.3
(-0.8)
A 		63.6
(3)
A 		26.2
(-1)
A 		63.4
(3)
A 		7
(-3)
A 		57
B 41.4
(-0)
A 		39.8
(-0.6)
A 		40.9
(-0.2)
A 		49.8
(2.9)
A 		32.7
(-3)
A 		50.1
(3)
P 		17
C 31.3
(-0.6)
A 		70.1
(3)
P 		5.8
(-3)
A 		64.6
(2.5)
A 		24.3
(-1.3)
A 		60.8
(2.1)
P 		64
avr 26.7
(-3) 		45.7
(2.6) 		36.8
(-0) 		46.9
(3) 		40.1
(1) 		39.3
(0.7) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.3
(3)
A 		1.2
(-3)
A 		12
(0.8)
A 		15.1
(1.9)
A 		17
B 2.9
(-2.6)
A 		2.3
(-3)
A 		5
(-1.3)
A 		11.7
(3)
A 		9
C 10.1
(3)
A 		4.5
(-1.1)
A 		1.9
(-3)
A 		2.4
(-2.6)
A 		8
avr 10.4
(3) 		2.7
(-3) 		6.3
(-0.2) 		9.7
(2.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.4
(-3)
A 		9.7
(-0.2)
A 		13.8
(1.2)
A 		6.6
(-1.2)
A 		19.1
(3)
A 		1.7
(-2.9)
A 		18
B 14.4
(0.1)
A 		13.2
(-0.8)
A 		9.9
(-3)
A 		13.2
(-0.8)
A 		13.3
(-0.7)
A 		18.7
(3)
P 		9
C 11.6
(0)
A 		21.4
(3)
P 		1.5
(-3)
A 		13
(0.5)
A 		7.9
(-1.1)
A 		20.3
(2.7)
P 		20
avr 9.1
(-2.3) 		14.8
(3) 		8.4
(-3) 		10.9
(-0.7) 		13.4
(1.7) 		13.6
(1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9929
Sequence Type Exemplar sequence
Representative Public ID R102.3 NCBI
Target Description R102.3 /REP_DB=WormBase Gene ID /WP=CE06331 /TR=Q21889 /GB=CAA94357.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069576(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069576 NCBI Caenorhabditis elegans R102.3 (R102.3) mRNA, complete cds. 10/11 None
SNAP00000034330 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10690466:10691641:1 10/11 None
GENEFINDER00000034343 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10690466:10691641:1 10/11 None
R102.3 ENSEMBL cdna:known chromosome:CEL140:IV:10690457:10691641:1 gene:R102.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10690471-10691647(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R102.3
Entrez Gene 177960 Entrez gene
SwissProt Q21889 EMBL-EBI
WormBase CE35600 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94357 Hypothetical protein R102.3 [Caenorhabditis elegans] ref|NP_501977.2| R102.3 [Caenorhabditis elegans] 0.0
blast CAE74049 Hypothetical protein CBG21701 [Caenorhabditis briggsae] 3.0E-52
blast CAE60763 Hypothetical protein CBG04451 [Caenorhabditis briggsae] 3.0E-45
Sequence
Target Sequence 
>C. ELEGANS:177351_AT
ttcttggacaactggcgatgcttttaagcacatcgcccacaattaaattcgagtgtgctc
ctgtgactgctttgatgaagaatctcgatggttccatgcgaaagttttatactgcagaag
ttgaaaattttgctgaagcagaacttggtttattgtcgatgtcccatctctccccaatga
atgcatctgctcgtttcaaattcacaatgaatgagaaaccatttgtcacagttaatgttg
gatatcatagtaacattgaccaatgcagacgccaaaagacgattgtgattgagcaaacgg
tcgacggaacagttcctgcgagacgtgtgacttttggatttccattagtatccagagttg
aagagtatgaacttgatgaaggagtatgtcttgtgatatcattttgtgtatttttaattt
atttattactgtttcagctcccattcattcctcttcggaactctacaaaagtattcgatc
tttcgcaacattttggaaacgtgcaggctttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGGACAACTGGCGATGCTTTT 457 689 593 Antisense
TTTTAAGCACATCGCCCACAATTAA 159 675 614 Antisense
GAACTTGGTTTATTGTCGATGTCCC 556 349 733 Antisense
ATCTCTCCCCAATGAATGCATCTGC 417 33 758 Antisense
ATGCATCTGCTCGTTTCAAATTCAC 464 43 773 Antisense
GCAAACGGTCGACGGAACAGTTCCT 75 319 885 Antisense
GAACAGTTCCTGCGAGACGTGTGAC 679 351 899 Antisense
GACGTGTGACTTTTGGATTTCCATT 288 377 914 Antisense
TATTACTGTTTCAGCTCCCATTCAT 406 663 1016 Antisense
ATTCATTCCTCTTCGGAACTCTACA 439 11 1035 Antisense
ATTTTGGAAACGTGCAGGCTTTGCC 195 13 1082 Antisense
Sequence Source Affymetrix Proprietary Database