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[177348_at]

Description M163.5 /REP_DB=WormBase Gene ID /WP=CE12454 /TR=Q93900 /GB=CAB01891.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 73.9
(-2)
A 		59
(-3)
A 		75.8
(-1.8)
A 		145.2
(3)
A 		86
B 99.6
(3)
A 		72.8
(1.2)
A 		12.1
(-3)
A 		33
(-1.6)
A 		88
C 148
(3)
A 		87.6
(0.4)
A 		8.9
(-3)
A 		102.8
(1.1)
A 		139
avr 107.2
(3) 		73.1
(0.3) 		32.3
(-3) 		93.7
(1.9) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 150
(3)
A 		34.5
(-2.1)
A 		13.7
(-3)
A 		67.1
(-0.6)
A 		75.4
(-0.3)
A 		15.9
(-2.9)
A 		136
B 102
(3)
A 		65.9
(0.6)
A 		12.5
(-3)
A 		48.9
(-0.6)
A 		62.5
(0.4)
A 		63.2
(0.4)
A 		90
C 67
(-0.5)
A 		94
(1)
A 		43.6
(-1.8)
A 		129.6
(3)
A 		22.1
(-3)
A 		77.3
(0.1)
A 		108
avr 106.3
(3) 		64.8
(0) 		23.3
(-3) 		81.9
(1.2) 		53.3
(-0.8) 		52.1
(-0.9) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 26.9
(3)
A 		12.8
(-3)
A 		19.8
(-0)
A 		21.3
(0.6)
A 		14
B 31.8
(3)
A 		18
(0.1)
A 		2.8
(-3)
A 		7
(-2.1)
A 		29
C 49
(3)
A 		25.2
(-0.1)
A 		3.1
(-3)
A 		17.3
(-1.1)
A 		46
avr 35.9
(3) 		18.7
(-0.8) 		8.6
(-3) 		15.2
(-1.5) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 27.6
(3)
A 		12.3
(-0.7)
A 		3
(-3)
A 		17
(0.4)
A 		22.8
(1.8)
A 		3.9
(-2.8)
A 		25
B 35.5
(3)
A 		21.9
(0.5)
A 		3
(-3)
A 		12.9
(-1.2)
A 		25.4
(1.1)
A 		23.6
(0.8)
A 		33
C 24.8
(1.9)
A 		28.7
(3)
A 		11.1
(-1.9)
A 		26.1
(2.3)
A 		7.2
(-3)
A 		25.9
(2.2)
A 		22
avr 29.3
(3) 		21
(0.9) 		5.7
(-3) 		18.7
(0.3) 		18.5
(0.3) 		17.8
(0.1) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17969
Sequence Type Exemplar sequence
Representative Public ID M163.5 NCBI
Target Description M163.5 /REP_DB=WormBase Gene ID /WP=CE12454 /TR=Q93900 /GB=CAB01891.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078007 NCBI Caenorhabditis elegans M163.5 (M163.5) mRNA, complete cds. 11/11 None
GENEFINDER00000011168 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14473959:14476429:1 11/11 None
M163.5 ENSEMBL cdna:known chromosome:CEL140:X:14473959:14476072:1 gene:M163.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14473958-14476072(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M163.5
Entrez Gene 187493 Entrez gene
SwissProt Q93900 EMBL-EBI
WormBase CE12454 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01891 Hypothetical protein M163.5 [Caenorhabditis elegans] ref|NP_510408.1| M163.5 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177348_AT
tgcctccaatcttaaactctgctgataacagggctcaggaaattgaaagtaaaccggaaa
aagaatgccaaaaaccgattcccacatcacaaagcgcaaattacagcagttttaacagac
acttaaataagaactctactaattcaaagcccaaatccgtgcattcggagtcccgtgatt
cttccaagcaaagatcaactacaacaaacccggtgcagaagcaagtggatctccccaaac
ccaaagcagatttgacaacaaaacattcttctagcaattctcctcataagcttgctgaag
cttcgacttcaaaatctccatctccgatttcagagtgctcccgccggagcagctcttctg
cgtctacatcgaagaacttggtagttgataagcataaccttgctgagaatctaaaatcga
tagtttctcaagttggaggatctgaatatacgagccacgtttccttgaacaaaatgtttg
agaacaaaattgtggaaatgtttcatgcgactatgttctccatggatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTCCAATCTTAAACTCTGCTGA 523 585 704 Antisense
GAATGCCAAAAACCGATTCCCACAT 188 331 766 Antisense
AATTCAAAGCCCAAATCCGTGCATT 479 175 844 Antisense
ATCCGTGCATTCGGAGTCCCGTGAT 39 39 858 Antisense
GTCCCGTGATTCTTCCAAGCAAAGA 528 475 873 Antisense
GATCAACTACAACAAACCCGGTGCA 449 421 896 Antisense
TCTTCTAGCAATTCTCCTCATAAGC 517 615 970 Antisense
CCATCTCCGATTTCAGAGTGCTCCC 462 271 1021 Antisense
AGCTCTTCTGCGTCTACATCGAAGA 518 79 1054 Antisense
TATACGAGCCACGTTTCCTTGAACA 629 657 1150 Antisense
ATGCGACTATGTTCTCCATGGATCA 440 41 1208 Antisense
Sequence Source Affymetrix Proprietary Database