[Home] | [Total List]

[177347_at]

Description VC5.4 /REP_DB=WormBase Gene ID /WP=CE21225 /TR=Q9TYU5 /GB=AAC78211.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 83      6grp_total > 59      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 650.5
(3)
P 		335.2
(-3)
P 		384.3
(-2.1)
P 		492.6
(-0)
P 		315
B 693.2
(3)
P 		399
(-1)
P 		248.3
(-3)
P 		487
(0.2)
P 		445
C 698.1
(3)
P 		394
(-2.8)
P 		381.7
(-3)
P 		450.8
(-1.7)
P 		316
avr 680.6
(3) 		376.1
(-2.3) 		338.1
(-3) 		476.8
(-0.6) 		343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 525.8
(1.9)
P 		445.4
(-0.3)
P 		341.3
(-3)
P 		480.8
(0.7)
P 		477.3
(0.6)
P 		569.5
(3)
P 		228
B 546.7
(0.3)
P 		434.8
(-2.1)
P 		394.4
(-3)
P 		397.1
(-2.9)
P 		523.3
(-0.2)
P 		668.2
(3)
P 		274
C 467.9
(-1.2)
P 		540
(0.2)
P 		378.5
(-3)
P 		430.6
(-2)
P 		443.6
(-1.7)
P 		682.3
(3)
P 		304
avr 513.5
(0.2) 		473.4
(-0.7) 		371.4
(-3) 		436.2
(-1.6) 		481.4
(-0.5) 		640
(3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 236.9
(3)
P 		72.8
(-3)
P 		100.5
(-2)
P 		72.1
(-3)
P 		165
B 221.1
(3)
P 		98.6
(-1.5)
P 		57.5
(-3)
P 		103.8
(-1.3)
P 		164
C 231.1
(3)
P 		113.3
(-1.6)
P 		133
(-0.8)
P 		76
(-3)
P 		155
avr 229.7
(3) 		94.9
(-2.6) 		97
(-2.5) 		84
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 96.9
(-1.4)
P 		158.4
(3)
P 		74.3
(-3)
P 		121.9
(0.4)
P 		144
(2)
P 		138.7
(1.6)
P 		84
B 190.2
(0.7)
P 		144.7
(-1.1)
P 		95.8
(-3)
P 		105.2
(-2.6)
P 		212.6
(1.6)
P 		249.2
(3)
P 		153
C 173.4
(0.7)
P 		164.8
(0.3)
P 		96.3
(-2.6)
P 		86.6
(-3)
P 		143.5
(-0.6)
P 		228.4
(3)
P 		142
avr 153.5
(0.3) 		156
(0.5) 		88.8
(-3) 		104.6
(-2.2) 		166.7
(1) 		205.4
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12128
Sequence Type Exemplar sequence
Representative Public ID VC5.4 NCBI
Target Description VC5.4 /REP_DB=WormBase Gene ID /WP=CE21225 /TR=Q9TYU5 /GB=AAC78211.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072395 NCBI Caenorhabditis elegans MYST family histone acetyltransferase-like family member (mys-1) (mys-1) mRNA, complete cds. 11/11 None
SNAP00000038536 ENSEMBL cdna:SNAP chromosome:CEL140:V:7084351:7087246:-1 11/11 None
GENEFINDER00000038544 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7084178:7087246:-1 11/11 None
VC5.4 ENSEMBL cdna:known chromosome:CEL140:V:7084137:7087255:-1 gene:VC5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7085265-7087247(-) 98.77 98.77
Public Domain and Genome References
Gene Title
Gene Symbol mys-1
Ensembl VC5.4
Entrez Gene 179096 Entrez gene
SwissProt Q9TYU5 EMBL-EBI
WormBase CE21225 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247238_AT histone acetyltransferase, putative at
CANINE_2:CFAAFFX.20597.1.S1_S_AT similar to HIV-1 Tat interactive protein, 60kDa isoform 3 cfa
DROSOPHILA_2:1635824_AT dm
DROSGENOME1:154558_AT dm
HG-U133A_2:214258_X_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133A:214258_X_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133_PLUS_2:214258_X_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U95AV2:465_AT HIV-1 Tat interacting protein, 60kDa hs
HC-G110:465_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133_PLUS_2:209192_X_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133A_2:209192_X_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133A:209192_X_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133_PLUS_2:206689_X_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133A:206689_X_AT HIV-1 Tat interacting protein, 60kDa hs
HG-FOCUS:206689_X_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133A_2:206689_X_AT HIV-1 Tat interacting protein, 60kDa hs
HU35KSUBA:HUM_ALU_AT HIV-1 Tat interacting protein, 60kDa hs
HU35KSUBB:HUM_ALU_AT HIV-1 Tat interacting protein, 60kDa hs
HU35KSUBC:HUM_ALU_AT HIV-1 Tat interacting protein, 60kDa hs
HU35KSUBD:HUM_ALU_AT HIV-1 Tat interacting protein, 60kDa hs
HUGENEFL:HUM_ALU_AT HIV-1 Tat interacting protein, 60kDa hs
HC-G110:HUM_ALU_AT HIV-1 Tat interacting protein, 60kDa hs
HUGENEFL:U74667_AT HIV-1 Tat interacting protein, 60kDa hs
U133_X3P:HS.6364.4.A1_3P_A_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133_PLUS_2:227543_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U133B:227543_AT HIV-1 Tat interacting protein, 60kDa hs
U133_X3P:HS.6364.2.A1_3P_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U95E:89778_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U95E:89780_G_AT HIV-1 Tat interacting protein, 60kDa hs
HG-U95E:89782_AT HIV-1 Tat interacting protein, 60kDa hs
MG-U74BV2:111883_AT HIV-1 tat interactive protein, homolog (human) mm
MOE430B:1433981_S_AT HIV-1 tat interactive protein, homolog (human) mm
MOUSE430_2:1433981_S_AT HIV-1 tat interactive protein, homolog (human) mm
MOE430B:1433980_AT HIV-1 tat interactive protein, homolog (human) mm
MOUSE430_2:1433980_AT HIV-1 tat interactive protein, homolog (human) mm
MU19KSUBA:TC16288_AT Tip55 (Tip60) mRNA, complete cds, alternatively spliced mm
MU19KSUBA:TC16288_G_AT Tip55 (Tip60) mRNA, complete cds, alternatively spliced mm
MU19KSUBC:TC36034_AT Tip55 (Tip60) mRNA, complete cds, alternatively spliced mm
RG-U34A:RC_AA800738_AT HIV-1 tat interactive protein, homolog (human) rn
RAE230A:1372366_AT HIV-1 tat interactive protein, homolog (human) rn
RAT230_2:1372366_AT HIV-1 tat interactive protein, homolog (human) rn
RAE230A:1375154_AT HIV-1 tat interactive protein, homolog (human) rn
RAT230_2:1375154_AT HIV-1 tat interactive protein, homolog (human) rn
YEAST_2:1778955_AT Histone acetyltransferase catalytic subunit of the native multisubunit complex (NuA4) that acetylates four conserved internal lysines of histone H4 N-terminal tail; required for cell cycle progression Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC78211 Myst family histone acetyltransferase-like protein 1 [Caenorhabditis elegans] ref|NP_504796.1| MYST family histone acetyltransferase-like family member (mys-1) [Caenorhabditis elegans] gb|AAS65427.1| histone acetyltransferase [Caenorhabditis elegans] 0.0
blast CAE72000 Hypothetical protein CBG19077 [Caenorhabditis briggsae] 0.0
blast XP_887639 PREDICTED: similar to HIV-1 Tat interactive protein, 60kDa isoform 3 isoform 8 [Bos taurus] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR002717 EMBL-EBI MOZ/SAS-like protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177347_AT
tgctcagaatctatgcctgcttgccaaactttttctggatcacaagactctttactatga
cacggatccatttttgttctatgtgctaaccgaagaagacgagaagggtcatcatatagt
tggatacttttcaaaagaaaaagaatcagctgaagaatataatgttgcgtgtattcttgt
gttacctccatttcaaaagaaaggatacggaagtttgctcatcgaattcagctatgaact
ctcgaaaattgaacagaagacaggatcacccgaaaaaccactatcagatttgggacttct
ctcatatcgatcgtactggtcaatggccatcatgaaagagcttttcgcattcaaaagacg
acatccaggcgaagatatcacagttcaggacatttcacaaagtacatcgattaaacgaga
agatgttgtgtcaacgttacagcaacttgatctatacaaatactataagggatcatacat
aattgtgattagtgatgaaaagcgtcaagtttatgagaaacggattgaggctgcgaaaaa
gaagacacgaattaatccagcagctctgcaatggcgaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCAGAATCTATGCCTGCTTGCC 351 581 771 Antisense
GCCTGCTTGCCAAACTTTTTCTGGA 346 283 785 Antisense
GACTCTTTACTATGACACGGATCCA 89 373 816 Antisense
GACACGGATCCATTTTTGTTCTATG 405 367 829 Antisense
TGCGTGTATTCTTGTGTTACCTCCA 446 583 936 Antisense
GGAAGTTTGCTCATCGAATTCAGCT 611 531 979 Antisense
ACAGGATCACCCGAAAAACCACTAT 322 107 1030 Antisense
ATTTGGGACTTCTCTCATATCGATC 50 19 1058 Antisense
GATCGTACTGGTCAATGGCCATCAT 264 417 1079 Antisense
GACACGAATTAATCCAGCAGCTCTG 307 365 1314 Antisense
TCCAGCAGCTCTGCAATGGCGACCC 617 589 1326 Antisense
Sequence Source Affymetrix Proprietary Database