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[177345_at]

Description AH10.3 /REP_DB=WormBase Gene ID /WP=CE07657 /TR=O02201 /GB=CAB02687.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 42
(3)
A 		5.8
(-3)
A 		9.7
(-2.4)
A 		19.5
(-0.7)
A 		36
B 57.1
(2.9)
A 		19.7
(-1.9)
A 		11.3
(-3)
A 		58
(3)
A 		47
C 8.5
(-1.5)
A 		22
(3)
A 		4.1
(-3)
A 		12.8
(-0.1)
A 		18
avr 35.9
(3) 		15.8
(-1.4) 		8.4
(-3) 		30.1
(1.7) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 38.6
(1.7)
A 		3.2
(-2.9)
A 		2.2
(-3)
A 		5.9
(-2.5)
A 		48.4
(3)
A 		33.5
(1.1)
A 		46
B 44.3
(3)
A 		23
(-0.9)
A 		11.4
(-3)
A 		13
(-2.7)
A 		12.1
(-2.9)
A 		22.1
(-1)
A 		33
C 36.6
(0.7)
A 		29
(-0.3)
A 		6.5
(-3)
A 		10.7
(-2.5)
A 		6.8
(-3)
A 		55.9
(3)
A 		49
avr 39.8
(3) 		18.4
(-0.9) 		6.7
(-3) 		9.9
(-2.4) 		22.4
(-0.2) 		37.2
(2.5) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 15.3
(3)
A 		1.3
(-3)
A 		2.5
(-2.5)
A 		2.9
(-2.3)
A 		14
B 18.2
(3)
A 		4.9
(-2.1)
A 		2.6
(-3)
A 		12.4
(0.8)
A 		16
C 2.8
(-1.3)
A 		6.3
(3)
A 		1.4
(-3)
A 		2.2
(-2)
A 		5
avr 12.1
(3) 		4.2
(-1.8) 		2.2
(-3) 		5.8
(-0.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.1
(-0.2)
A 		1.1
(-2.7)
A 		0.5
(-3)
A 		1.5
(-2.6)
A 		14.6
(3)
A 		8.1
(0.2)
A 		14
B 15.4
(3)
A 		7.7
(-0.7)
A 		2.8
(-3)
A 		3.4
(-2.7)
A 		4.9
(-2)
A 		8.2
(-0.4)
A 		13
C 13.6
(1.2)
A 		8.9
(-0.4)
A 		1.6
(-3)
A 		2.2
(-2.8)
A 		2.2
(-2.8)
A 		18.7
(3)
A 		17
avr 12
(3) 		5.9
(-0.5) 		1.6
(-3) 		2.4
(-2.5) 		7.2
(0.2) 		11.7
(2.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13113
Sequence Type Exemplar sequence
Representative Public ID AH10.3 NCBI
Target Description AH10.3 /REP_DB=WormBase Gene ID /WP=CE07657 /TR=O02201 /GB=CAB02687.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074100 NCBI Caenorhabditis elegans AH10.3 (AH10.3) mRNA, complete cds. 11/11 None
AH10.3 ENSEMBL cdna:known chromosome:CEL140:V:14146618:14147955:-1 gene:AH10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021615 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021618 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14146617-14147955(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl AH10.3
Entrez Gene 181813 Entrez gene
SwissProt O02201 EMBL-EBI
WormBase CE07657 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02687 Hypothetical protein AH10.3 [Caenorhabditis elegans] ref|NP_506501.1| AH10.3 [Caenorhabditis elegans] 1.0E-127
blast CAE61016 Hypothetical protein CBG04755 [Caenorhabditis briggsae] 2.0E-30
Sequence
Target Sequence 
>C. ELEGANS:177345_AT
gagaagtgttgatcgcatttatgcttataaggttaaggttagttcgatttttaatagaaa
acatctacaatactggtcaaaaaagtgtcttcttgagcttattttttttgaaaacttcgc
aaggttatcaaattttccaattggatatatcttatgtcagcactgtgtgtgttgcagcat
tataactatttcaaaagtggaaccgctcattaaaaagtttttacaatccttattttggtc
ccccccccccccccaatttacttcaatctcaactttcaaacaacttttaaaaatcccaca
gcaaagttcacctacgtgtgtacttctcatccataattccatgctctcttcccttctaaa
ctcgaacctaaccctcctagtaattcagactgctgctcaacttatacatatgtgcaactt
gtacaagctattcaaaaaagttatattgtcaaaaaataagaatctttcaaaacttccgga
gcaaagtttgtcctcccctccttgtcgtcatttttcttattcgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGTGTTGATCGCATTTATGCT 618 391 303 Antisense
GTGTCTTCTTGAGCTTATTTTTTTT 142 487 387 Antisense
GTCAGCACTGTGTGTGTTGCAGCAT 639 465 458 Antisense
CCCCCAATTTACTTCAATCTCAACT 156 261 552 Antisense
AAATCCCACAGCAAAGTTCACCTAC 58 119 593 Antisense
AGTTCACCTACGTGTGTACTTCTCA 558 63 607 Antisense
ACTTCTCATCCATAATTCCATGCTC 588 103 624 Antisense
GAACCTAACCCTCCTAGTAATTCAG 633 321 666 Antisense
GTAATTCAGACTGCTGCTCAACTTA 476 463 682 Antisense
TCCGGAGCAAAGTTTGTCCTCCCCT 579 593 777 Antisense
TTGTCGTCATTTTTCTTATTCGCCC 372 707 804 Antisense
Sequence Source Affymetrix Proprietary Database