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[177344_at]

Description Y37E11AL.C /REP_DB=WormBase Gene ID /WP=CE26062 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59446.1
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 81      6grp_total > 73      4grp_total > 40      6grp_cgc > 66      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 319.8
(-1.1)
P 		298.2
(-3)
P 		341.2
(0.8)
P 		366.1
(3)
P 		68
B 263.4
(-3)
P 		373.4
(0.7)
P 		441.3
(3)
P 		360.2
(0.3)
P 		178
C 362.6
(-0.8)
P 		407.8
(1.3)
P 		446.7
(3)
P 		313.2
(-3)
P 		134
avr 315.3
(-3) 		359.8
(-0.2) 		409.7
(3) 		346.5
(-1) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 180.9
(-3)
P 		247.7
(0.1)
P 		278.9
(1.5)
P 		256.5
(0.5)
P 		237.7
(-0.4)
P 		311.3
(3)
P 		130
B 258.7
(-2.5)
P 		283.8
(-0.5)
P 		327
(3)
P 		251.9
(-3)
P 		306.1
(1.3)
P 		257.5
(-2.6)
P 		75
C 253.9
(-2.5)
P 		247.6
(-3)
P 		249.8
(-2.8)
P 		306.8
(1.6)
P 		325.2
(3)
P 		281.5
(-0.4)
P 		78
avr 231.2
(-3) 		259.7
(-0.1) 		285.2
(2.5) 		271.7
(1.2) 		289.7
(3) 		283.4
(2.4) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 116.4
(3)
P 		64.7
(-1.9)
P 		89.2
(0.4)
P 		53.6
(-3)
P 		63
B 84
(-1.3)
P 		92.2
(0.6)
P 		102.3
(3)
P 		76.8
(-3)
P 		26
C 120
(0.9)
P 		117.2
(0.8)
P 		155.7
(3)
P 		52.8
(-3)
P 		103
avr 106.8
(2) 		91.4
(0.3) 		115.7
(3) 		61.1
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 33.3
(-3)
P 		88.1
(3)
P 		60.7
(0)
P 		65.1
(0.5)
P 		71.7
(1.2)
P 		75.8
(1.7)
P 		55
B 90
(-0.6)
P 		94.5
(-0.1)
P 		79.4
(-1.7)
P 		66.7
(-3)
P 		124.3
(3)
P 		96
(0.1)
P 		58
C 94.1
(1.5)
P 		75.5
(-1.1)
P 		63.6
(-2.7)
P 		61.7
(-3)
P 		105.2
(3)
P 		94.2
(1.5)
P 		44
avr 72.5
(-1.7) 		86
(0.6) 		67.9
(-2.4) 		64.5
(-3) 		100.4
(3) 		88.7
(1) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19327
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.C NCBI
Target Description Y37E11AL.C /REP_DB=WormBase Gene ID /WP=CE26062 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59446.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067995(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067995 NCBI Caenorhabditis elegans Methionine AminoPeptidase family member (map-1) (map-1) mRNA, complete cds. 11/11 A 
SNAP00000035935 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3683604:3698219:-1 10/11 None
Y37E11AL.7 ENSEMBL cdna:known chromosome:CEL140:IV:3683546:3686857:-1 gene:Y37E11AL.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035941 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3685284-3694717(-) 98.71 100.0
Public Domain and Genome References
Gene Title
Gene Symbol map-1
Ensembl Y37E11AL.7
Entrez Gene 177128 Entrez gene
SwissProt Q965Y1 EMBL-EBI
WormBase CE33852 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20668_AT methionyl aminopeptidase, putative / methionine aminopeptidase, putative / peptidase M, putative at
ATH1-121501:245144_AT methionyl aminopeptidase, putative / methionine aminopeptidase, putative / peptidase M, putative at
CANINE_2:CFAAFFX.16132.1.S1_AT similar to Methionine aminopeptidase 1 (MetAP 1) (MAP 1) (Peptidase M 1) cfa
DROSOPHILA_2:1625968_AT dm
DROSGENOME1:152529_AT dm
CHICKEN:GGAAFFX.12862.1.S1_S_AT methionyl aminopeptidase 1 gga
CHICKEN:GGAAFFX.7758.2.S1_S_AT methionyl aminopeptidase 1 gga
HUGENEFL:D42084_AT methionyl aminopeptidase 1 hs
U133_X3P:HS.82007.0.S1_3P_AT methionyl aminopeptidase 1 hs
HG-U133A_2:212673_AT methionyl aminopeptidase 1 hs
HG-U133_PLUS_2:212673_AT methionyl aminopeptidase 1 hs
HG-U133A:212673_AT methionyl aminopeptidase 1 hs
HG-U95AV2:37619_AT methionyl aminopeptidase 1 hs
HG-U95C:55487_AT Methionyl aminopeptidase 1 hs
HU35KSUBB:RC_H70785_AT Methionyl aminopeptidase 1 hs
MU11KSUBA:AA711193_I_AT methionyl aminopeptidase 1 mm
MU11KSUBA:AA711193_F_AT methionyl aminopeptidase 1 mm
MG-U74AV2:104015_AT methionyl aminopeptidase 1 mm
MG-U74BV2:111123_S_AT methionyl aminopeptidase 1 mm
MG-U74AV2:161413_F_AT methionyl aminopeptidase 1 mm
MG-U74BV2:163899_AT methionyl aminopeptidase 1 mm
MOE430A:1426836_S_AT methionyl aminopeptidase 1 mm
MOUSE430A_2:1426836_S_AT methionyl aminopeptidase 1 mm
MOUSE430_2:1426836_S_AT methionyl aminopeptidase 1 mm
MOE430A:1426835_AT methionyl aminopeptidase 1 mm
MOUSE430A_2:1426835_AT methionyl aminopeptidase 1 mm
MOUSE430_2:1426835_AT methionyl aminopeptidase 1 mm
MOE430A:1426837_AT methionyl aminopeptidase 1 mm
MOUSE430A_2:1426837_AT methionyl aminopeptidase 1 mm
MOUSE430_2:1426837_AT methionyl aminopeptidase 1 mm
MG-U74CV2:133903_AT Methionyl aminopeptidase 1, mRNA (cDNA clone IMAGE:5359840) mm
MU19KSUBB:TC31550_AT Methionyl aminopeptidase 1, mRNA (cDNA clone IMAGE:5359840) mm
RG-U34B:RC_AA851686_AT methionyl aminopeptidase 1 (predicted) rn
RG-U34C:RC_AI101470_AT methionyl aminopeptidase 1 (predicted) rn
RAE230A:1399137_AT methionyl aminopeptidase 1 (predicted) rn
RAT230_2:1399137_AT methionyl aminopeptidase 1 (predicted) rn
RAE230A:1389634_AT methionyl aminopeptidase 1 (predicted) rn
RAT230_2:1389634_AT methionyl aminopeptidase 1 (predicted) rn
YEAST_2:1771766_AT Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map2p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4239 methionyl aminopeptidase activity inferred from electronic annotation QuickGO AmiGO
8235 metalloexopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68429 Methionine aminopeptidase protein 1 [Caenorhabditis elegans] ref|NP_500396.2| Methionine AminoPeptidase family member (map-1) [Caenorhabditis elegans] 0.0
blast CAE63782 Hypothetical protein CBG08323 [Caenorhabditis briggsae] 0.0
blast AAK68430 Hypothetical protein Y37E11AL.8 [Caenorhabditis elegans] ref|NP_500397.1| Y37E11AL.8 [Caenorhabditis elegans] 0.0
blast CAE63783 Hypothetical protein CBG08324 [Caenorhabditis briggsae] 0.0
blast EAA08766 ENSANGP00000021308 [Anopheles gambiae str. PEST] ref|XP_313492.2| ENSANGP00000021308 [Anopheles gambiae str. PEST] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR000994 EMBL-EBI Peptidase M24 6.9E-21
Pfam IPR000994 EMBL-EBI Peptidase M24 6.9E-21
Sequence
Target Sequence 
>C. ELEGANS:177344_AT
gtcaacgggccgtacaatccgtggccgtgctactcggctcgcttcgcccaggccgagtca
ccgatcgtcgcccggttcccgatcacatcccccgcccggattacgcccttcacccgcaag
gcgtctctctggaggaacgtcaatcgaaaagtgaacgtgtgattaaagtattgaccgacg
aggagaaggagggcctgaaagtggcctgtaaactaggccgtgaatgcctgaatgaggccg
ccaaggcctgcgggcctggagttactactgaggaaatcgatcgagttgtgcatgaggcgg
caattgaacgagattgttatccgagcccgttgggatattataagttcccgaagagttgtt
gtacttctgttaatgaggtcatttgtcatggaattccggatatgagaaagttggagaatg
gagatctttgcaatgtcgacgtcaccgtctatcaccgcggtttccatggagatctcaacg
aaaccttcttggtcggtgataaagtcgacgaggagtccaggaaacttgtcaaagttacat
ttgagtgtcttcaacaggctatcgctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAACGGGCCGTACAATCCGTGGC 266 463 2498 Antisense
GCAAGGCGTCTCTCTGGAGGAACGT 9 321 2613 Antisense
ATGCCTGAATGAGGCCGCCAAGGCC 491 39 2721 Antisense
GCGGGCCTGGAGTTACTACTGAGGA 526 291 2747 Antisense
TCGATCGAGTTGTGCATGAGGCGGC 129 601 2774 Antisense
GAACGAGATTGTTATCCGAGCCCGT 634 347 2803 Antisense
GAGGTCATTTGTCATGGAATTCCGG 167 403 2872 Antisense
AGATCTTTGCAATGTCGACGTCACC 229 65 2919 Antisense
ATCACCGCGGTTTCCATGGAGATCT 271 29 2948 Antisense
ATCTCAACGAAACCTTCTTGGTCGG 390 11 2969 Antisense
GTGTCTTCAACAGGCTATCGCTATT 693 485 3042 Antisense
Sequence Source Affymetrix Proprietary Database