[Home] | [Total List]

[177343_at]

Description R102.8 /REP_DB=WormBase Gene ID /WP=CE23916 /TR=Q9U388 /GB=CAB54292.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 51      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 30.1
(0.5)
A 		17.8
(-2.7)
M 		39.6
(3)
M 		16.7
(-3)
A 		23
B 23.5
(-2.4)
M 		52.9
(3)
P 		38
(0.3)
A 		20.2
(-3)
P 		33
C 27.3
(-0.6)
P 		65.2
(3)
P 		13.2
(-2)
A 		2.3
(-3)
A 		63
avr 27
(-0.4) 		45.3
(3) 		30.3
(0.2) 		13.1
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 8.1
(-3)
A 		19.9
(-1.7)
P 		19.9
(-1.7)
A 		22.4
(-1.5)
A 		36.4
(0)
A 		63.8
(3)
P 		56
B 14.3
(-1.9)
A 		22.6
(-1.3)
A 		21.2
(-1.4)
A 		0.8
(-3)
A 		48.3
(0.8)
P 		76.2
(3)
P 		75
C 17.8
(-2.7)
A 		13
(-3)
A 		78.8
(1.3)
P 		29.3
(-1.9)
A 		44.5
(-0.9)
P 		104.8
(3)
P 		92
avr 13.4
(-3) 		18.5
(-2.6) 		40
(-0.7) 		17.5
(-2.6) 		43.1
(-0.4) 		81.6
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11
(3)
A 		3.9
(-2)
M 		10.3
(2.5)
M 		2.5
(-3)
A 		9
B 7.5
(-0.8)
M 		13.1
(3)
P 		8.8
(0.1)
A 		4.3
(-3)
P 		9
C 9
(-0.2)
P 		18.7
(3)
P 		4.6
(-1.6)
A 		0.4
(-3)
A 		18
avr 9.2
(1.3) 		11.9
(3) 		7.9
(0.5) 		2.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 1.5
(-3)
A 		7.1
(-0.6)
P 		4.3
(-1.8)
A 		5.7
(-1.2)
A 		11
(1.1)
A 		15.5
(3)
P 		14
B 5
(-2)
A 		7.5
(-1.4)
A 		5.1
(-2)
A 		0.2
(-3)
A 		19.6
(1.1)
P 		28.4
(3)
P 		28
C 6.6
(-2.5)
A 		4
(-3)
A 		20.1
(0.1)
P 		5.9
(-2.6)
A 		14.4
(-1)
P 		35.1
(3)
P 		31
avr 4.4
(-2.9) 		6.2
(-2.4) 		9.8
(-1.4) 		3.9
(-3) 		15
(-0) 		26.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9736
Sequence Type Exemplar sequence
Representative Public ID R102.8 NCBI
Target Description R102.8 /REP_DB=WormBase Gene ID /WP=CE23916 /TR=Q9U388 /GB=CAB54292.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069575 NCBI Caenorhabditis elegans R102.8 (R102.8) mRNA, complete cds. 11/11 None
R102.8 ENSEMBL cdna:known chromosome:CEL140:IV:10689588:10690305:-1 gene:R102.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034329 4/11 Cross Hyb Matching Probes None
GENEFINDER00000034346 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10689593-10690311(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R102.8
Entrez Gene 187894 Entrez gene
SwissProt Q9U388 EMBL-EBI
WormBase CE23916 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54292 Hypothetical protein R102.8 [Caenorhabditis elegans] ref|NP_501976.1| R102.8 [Caenorhabditis elegans] 1.0E-123
blast CAE60777 Hypothetical protein CBG04466 [Caenorhabditis briggsae] 2.0E-32
blast CAE60764 Hypothetical protein CBG04452 [Caenorhabditis briggsae] 4.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501976.1 1 39-61
R102.8 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:177343_AT
agcacctatgttttaccagaatccaataatttcttcaacccttctacttatcgtctttac
atccacgttttgctcacgatgcgtatacttctcatcctgtttattacagtggcatatgta
acggcgtttccaggatttcctaaaacaaaatgggatcctttcgtttttgacattacggtc
tattgcaatgacaaaactcgtgatacgtacaatttgctcattgagtggtgggaagatgat
actatgcccggaatggaacagatcactcgtccacaattttaccacccaaaaccgggaaac
ttcagctttagaatggaaggagccatggatggtgacgaatccttttctgatggacataaa
ccagttgcatatataactcatgattgtcacaaaaaggcgcaacaagttgaactcgtctta
actgttaatacgttatgtaagactgagaattcttgccattatcgtattattcaagacatt
tccggagctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACCTATGTTTTACCAGAATCCA 250 77 73 Antisense
TTCTACTTATCGTCTTTACATCCAC 384 687 114 Antisense
ATCCACGTTTTGCTCACGATGCGTA 474 39 133 Antisense
GTATACTTCTCATCCTGTTTATTAC 254 453 155 Antisense
TGTAACGGCGTTTCCAGGATTTCCT 650 557 189 Antisense
TGGGATCCTTTCGTTTTTGACATTA 667 553 223 Antisense
GGAAGATGATACTATGCCCGGAATG 471 531 303 Antisense
AACAGATCACTCGTCCACAATTTTA 266 137 329 Antisense
GATGGTGACGAATCCTTTTCTGATG 707 407 400 Antisense
GACTGAGAATTCTTGCCATTATCGT 303 375 513 Antisense
TATTCAAGACATTTCCGGAGCTCAA 619 663 540 Antisense
Sequence Source Affymetrix Proprietary Database