[Home] | [Total List]

[177342_at]

Description Y37E11AL.F /REP_DB=WormBase Gene ID /WP=CE21553 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59449.1
Cluster 6grp_high1_10_10 > 05      4grp_high_8_8 > 36      6grp_total > 06      4grp_total > 44      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 119.8
(-3)
P 		128.9
(1)
P 		122.7
(-1.7)
P 		133.4
(3)
P 		14
B 168.1
(2.4)
P 		178.6
(3)
P 		88.5
(-2.5)
P 		80.8
(-3)
P 		98
C 135.3
(-1)
P 		199.4
(3)
P 		102.7
(-3)
P 		139.9
(-0.7)
A 		97
avr 141.1
(0.4) 		169
(3) 		104.6
(-3) 		118
(-1.8) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 152.1
(3)
P 		108.6
(0.4)
P 		105.1
(0.2)
P 		52.1
(-3)
P 		104.6
(0.1)
P 		87.5
(-0.9)
P 		100
B 134.1
(3)
P 		97.7
(-0.3)
M 		67
(-3)
P 		103.4
(0.3)
A 		82.1
(-1.6)
P 		72.4
(-2.5)
P 		67
C 117.3
(2)
P 		101.2
(-0.4)
P 		124.2
(3)
P 		106.2
(0.3)
P 		106.7
(0.4)
P 		84.1
(-3)
A 		40
avr 134.5
(3) 		102.5
(-0.6) 		98.8
(-1) 		87.2
(-2.3) 		97.8
(-1.1) 		81.3
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 43.6
(3)
P 		28
(-0.9)
P 		32.1
(0.1)
P 		19.5
(-3)
P 		24
B 53.6
(3)
P 		44.1
(1.4)
P 		20.5
(-2.5)
P 		17.2
(-3)
P 		36
C 44.8
(0.8)
P 		57.3
(3)
P 		35.8
(-0.8)
P 		23.6
(-3)
A 		34
avr 47.3
(3) 		43.1
(2.1) 		29.5
(-0.9) 		20.1
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 28
(0.5)
P 		38.6
(3)
P 		22.9
(-0.7)
P 		13.2
(-3)
P 		31.6
(1.3)
P 		21.3
(-1.1)
P 		25
B 46.7
(3)
P 		32.5
(0.2)
M 		16.3
(-3)
P 		27.4
(-0.8)
A 		33.4
(0.4)
P 		27
(-0.9)
P 		30
C 43.5
(3)
P 		30.9
(-0.4)
P 		31.6
(-0.2)
P 		21.4
(-3)
P 		34.5
(0.6)
P 		28.1
(-1.2)
A 		22
avr 39.4
(3) 		34
(1.3) 		23.6
(-2.1) 		20.7
(-3) 		33.2
(1) 		25.5
(-1.5) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19350
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.F NCBI
Target Description Y37E11AL.F /REP_DB=WormBase Gene ID /WP=CE21553 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59449.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067992(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067992 NCBI Caenorhabditis elegans Y37E11AL.5 (Y37E11AL.5) mRNA, complete cds. 9/11 A 
SNAP00000035932 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3662008:3663759:-1 9/11 None
GENEFINDER00000035947 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3658559:3668698:-1 9/11 None
Y37E11AL.5 ENSEMBL cdna:known chromosome:CEL140:IV:3658952:3662763:-1 gene:Y37E11AL.5 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3662026-3663765(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AL.5
Entrez Gene 177127 Entrez gene
SwissProt Q9N451 EMBL-EBI
WormBase CE31636 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7218 neuropeptide signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59450 Hypothetical protein Y37E11AL.5 [Caenorhabditis elegans] ref|NP_500393.2| Y37E11AL.5 [Caenorhabditis elegans] 0.0
blast AAF59448 Hypothetical protein Y37E11AL.6 [Caenorhabditis elegans] ref|NP_500395.1| Y37E11AL.6 [Caenorhabditis elegans] 0.0
blast CAE63779 Hypothetical protein CBG08318 [Caenorhabditis briggsae] 0.0
blast CAE63778 Hypothetical protein CBG08317 [Caenorhabditis briggsae] 1.0E-175
blast AAF59450 Hypothetical protein Y37E11AL.5 [Caenorhabditis elegans] ref|NP_500393.2| Y37E11AL.5 [Caenorhabditis elegans] 1.0E-111
blast CAE63778 Hypothetical protein CBG08317 [Caenorhabditis briggsae] 5.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR000203 EMBL-EBI GPS domain 1.7E-6
Pfam IPR000203 EMBL-EBI GPS domain 1.7E-6
Pfam IPR000203 EMBL-EBI GPS domain 1.7E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500393.2 6 178-200,207-229,244-266,290-312,338-360,367-389
Y37E11AL.5 6 178-200,207-229,244-266,290-312,338-360,367-389
SNAP00000035932 1 331-350
GENEFINDER00000035947 7 720-742,754-773,788-810,831-853,875-897,918-940,946-968
Sequence
Target Sequence 
>C. ELEGANS:177342_AT
tgactctgtagttcaagccgacctagaccgtgtcccaggcaacactacaatgctccgtgc
ggagacctggagaatcattgagcagttttcccagagcttacccaccccgtactcgttaag
ctccccggataacggaatccacataaaatccatagagtggttgccgactacagatgagaa
tcacgttgttcgagtggtatgcacttctaatgcgacgctcttcgagctcctcgagccaaa
gagcccggttctttcgataaaacctgacagcctggaaccatttggaactacacggatgtc
gatctacatgagattccctgatatatatgacaattacacgtgtgtctattatgatgagga
ggagaaggcttggtcgacaaaagggatccgaagaattgagcacagctatcatggatatgt
caagtgtgagacaaatcattttggggtgtttgctttgttgccgacaataataaaactttc
aggatcgtctcttctacaattcggagtcgttttggaaggatcttgcgaatcacatgccta
ccgtaacctcgtttgtcacactgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTCTGTAGTTCAAGCCGACCTA 671 567 429 Antisense
CAGGCAACACTACAATGCTCCGTGC 486 209 464 Antisense
TTGAGCAGTTTTCCCAGAGCTTACC 542 703 506 Antisense
AGCTCCCCGGATAACGGAATCCACA 11 79 547 Antisense
GCACTTCTAATGCGACGCTCTTCGA 163 315 629 Antisense
CTCTTCGAGCTCCTCGAGCCAAAGA 70 229 646 Antisense
AGCCAAAGAGCCCGGTTCTTTCGAT 292 83 662 Antisense
TTTGGGGTGTTTGCTTTGTTGCCGA 54 643 868 Antisense
CTTTCAGGATCGTCTCTTCTACAAT 294 223 904 Antisense
AGGATCTTGCGAATCACATGCCTAC 270 57 945 Antisense
CGTAACCTCGTTTGTCACACTGATA 441 243 970 Antisense
Sequence Source Affymetrix Proprietary Database