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[177341_at]

Description R52.9 /REP_DB=WormBase Gene ID /WP=CE12840 /TR=O17294 /GB=AAB71066.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 0      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 23.4
(0)
A 		7.5
(-3)
A 		39.3
(3)
A 		15.7
(-1.5)
A 		32
B 0.9
(-3)
A 		4.7
(-2.3)
A 		4.2
(-2.4)
A 		33.5
(3)
A 		33
C 12.5
(-3)
A 		15.9
(-1)
A 		20.2
(1.6)
A 		22.6
(3)
A 		10
avr 12.3
(-1.8) 		9.4
(-3) 		21.2
(1.9) 		23.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 65.7
(0.4)
A 		27.7
(-1.8)
A 		74.3
(0.8)
P 		113
(3)
P 		52.2
(-0.4)
P 		5.9
(-3)
A 		107
B 6.9
(-3)
A 		41.6
(-1.6)
P 		76.8
(-0.2)
P 		158
(3)
P 		89.9
(0.3)
P 		41
(-1.6)
A 		151
C 22.7
(-2.3)
A 		26
(-2.2)
A 		91.4
(0.3)
P 		165
(3)
P 		47.6
(-1.4)
P 		4.4
(-3)
A 		161
avr 31.8
(-2.3) 		31.8
(-2.3) 		80.8
(-0) 		145.3
(3) 		63.2
(-0.8) 		17.1
(-3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.5
(1.8)
A 		1.6
(-3)
A 		10.3
(3)
A 		2.3
(-2.5)
A 		9
B 0.3
(-3)
A 		1.2
(-2.2)
A 		1
(-2.4)
A 		7.1
(3)
A 		7
C 4.1
(-2.4)
A 		4.6
(-1.5)
A 		7
(3)
A 		3.8
(-3)
A 		3
avr 4.3
(0) 		2.5
(-3) 		6.1
(3) 		4.4
(0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 12.1
(-0.6)
A 		9.9
(-1.1)
A 		16.2
(0.3)
P 		28.7
(3)
P 		15.8
(0.2)
P 		1.4
(-3)
A 		27
B 2.4
(-3)
A 		13.8
(-1.3)
P 		18.6
(-0.5)
P 		41.8
(3)
P 		36.5
(2.2)
P 		15.3
(-1)
A 		39
C 8.4
(-1.7)
A 		7.9
(-1.8)
A 		23.3
(1.1)
P 		33.2
(3)
P 		15.4
(-0.4)
P 		1.5
(-3)
A 		32
avr 7.6
(-2.7) 		10.5
(-2.1) 		19.4
(-0.2) 		34.6
(3) 		22.6
(0.5) 		6.1
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177341_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4047
Sequence Type Exemplar sequence
Representative Public ID R52.9 NCBI
Target Description R52.9 /REP_DB=WormBase Gene ID /WP=CE12840 /TR=O17294 /GB=AAB71066.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061787
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034573 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2117054:2122182:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061787 7/11 Cross Hyb Matching Probes None
SNAP00000034566 7/11 Cross Hyb Matching Probes None
R52.9 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2120737-2122181(-) 84.57 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71065 Hypothetical protein R52.8 [Caenorhabditis elegans] ref|NP_494187.1| R52.8 [Caenorhabditis elegans] 1.0E-137
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 1.0E-131
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.3E-38
Pfam IPR002083 EMBL-EBI MATH 5.9E-30
Pfam IPR002083 EMBL-EBI MATH 2.1E-40
Sequence
Target Sequence 
>C. ELEGANS:177341_AT
ggtagatcattcttgctggttcggaaaatcaaggatatatcaaatctcgaagatggagat
aatttcaagtgtgataatgaagtacgatacaacattccatggaatttgaaccgctataac
ttttttaaaggaaattttcaaatgtctcattgcaaaattcggagccttggcatttccaaa
aacgatggatttcttggtttcaacttgcactgtgaaaagcaagagtgcgaaaaaaagtgg
acttttgatacgaaattcatcatgaagttagtagcaggcaatggaaaatgtttccgacgg
actgtacaacataaattccaaaagccggaaggacatggaatggataaattcataagttgg
gagaatttgctaaaggattatgtggttaataatagtattatcattgaaatctatgccaat
atcgtcaacagcacagggttttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAGATCATTCTTGCTGGTTCGGA 317 505 19 Antisense
CATTCCATGGAATTTGAACCGCTAT 333 217 111 Antisense
TGGAATTTGAACCGCTATAACTTTT 346 543 118 Antisense
AGGAAATTTTCAAATGTCTCATTGC 420 55 147 Antisense
AAAATTCGGAGCCTTGGCATTTCCA 365 127 172 Antisense
GGAGCCTTGGCATTTCCAAAAACGA 617 521 179 Antisense
AACGATGGATTTCTTGGTTTCAACT 96 135 199 Antisense
TTCTTGGTTTCAACTTGCACTGTGA 228 689 209 Antisense
TTCATCATGAAGTTAGTAGCAGGCA 18 689 274 Antisense
GAAATCTATGCCAATATCGTCAACA 342 363 424 Antisense
ATCGTCAACAGCACAGGGTTTTTTG 606 35 439 Antisense
Sequence Source Affymetrix Proprietary Database